Crate openproteo_core 

openproteo-core is the shared foundation for the open Rust mass-spec parsers (opentfraw, opentimstdf, openwraw).

It exposes:

• Vendor-neutral spectrum / chromatogram / run records: SpectrumRecord, PrecursorInfo, ChromatogramRecord, RunMetadata, CvTerm.
• Shared enums: Polarity, ScanMode, Analyzer, MsPower, Activation.
• A trait every vendor parser implements: SpectrumSource.
• One canonical mzML 1.1.0 writer: write_mzml and write_indexed_mzml.

Each vendor crate is a standalone tool (a user can pull in opentfraw alone and get parsing and mzML export); openproteo-core is the shared vocabulary that keeps the three parsers in lock-step.

Modules

conformance

Conformance checks for any crate::SpectrumSource.

Structs

ChromatogramRecord

A chromatogram trace (TIC, BPC, SRM/MRM transition).

CvTerm

A PSI-MS controlled-vocabulary term.

PrecursorInfo

Precursor metadata for an MS2+ spectrum.

RunMetadata

Run-level metadata.

SpectrumRecord

One fully-decoded spectrum.

Enums

Activation

Activation method used for MSn fragmentation.

Analyzer

Detector / mass analyzer family.

Error

Stack-wide error type. Vendor errors are erased into a boxed trait object so this enum stays version-stable as vendor crates evolve.

MobilityArrayKind

Unit + meaning of a per-peak ion mobility array.

MsPower

MSn order (MS1, MS2, …).

Polarity

Scan polarity.

ScanMode

Whether a spectrum holds centroided peak picks or the raw profile signal.

Constants

VERSION

Crate version (set from Cargo.toml).

Traits

SpectrumSource

A source of decoded mass spectra.

Functions

write_indexed_mzml

Write the source’s spectra as indexed mzML 1.1.0 (with <indexList> and <fileChecksum> trailer).

write_mzml

Write the source’s spectra as mzML 1.1.0 (un-indexed).

Type Aliases

Result

Convenience alias.