List of all items[−]
Structs
- bam::Reader
- bam::Record
- bam::Writer
- bam::bai::Index
- bam::bai::Reader
- bam::bai::Writer
- bam::bai::index::Builder
- bam::bai::index::Index
- bam::bai::index::ReferenceSequence
- bam::bai::index::reference_sequence::Bin
- bam::bai::index::reference_sequence::ReferenceSequence
- bam::bai::index::reference_sequence::bin::Bin
- bam::reader::Query
- bam::reader::Reader
- bam::reader::Records
- bam::reader::UnmappedRecords
- bam::record::Cigar
- bam::record::Data
- bam::record::QualityScores
- bam::record::Record
- bam::record::ReferenceSequenceId
- bam::record::Sequence
- bam::record::cigar::Cigar
- bam::record::cigar::Op
- bam::record::cigar::Ops
- bam::record::cigar::op::LengthError
- bam::record::cigar::op::Op
- bam::record::data::Data
- bam::record::data::Field
- bam::record::data::Fields
- bam::record::data::field::Field
- bam::record::data::field::value::subtype::TryFromByteError
- bam::record::data::field::value::ty::TryFromByteError
- bam::record::quality_scores::Chars
- bam::record::quality_scores::QualityScores
- bam::record::quality_scores::Scores
- bam::record::reference_sequence_id::ReferenceSequenceId
- bam::record::reference_sequence_id::TryFromIntError
- bam::record::sequence::Bases
- bam::record::sequence::Sequence
- bcf::Reader
- bcf::Record
- bcf::Writer
- bcf::header::StringMap
- bcf::reader::Query
- bcf::reader::Reader
- bcf::reader::Records
- bgzf::Reader
- bgzf::VirtualPosition
- bgzf::Writer
- bgzf::virtual_position::VirtualPosition
- core::region::Mapped
- cram::DataContainer
- cram::FileDefinition
- cram::Reader
- cram::Record
- cram::Writer
- cram::crai::Reader
- cram::crai::Record
- cram::crai::Writer
- cram::crai::record::Record
- cram::data_container::CompressionHeader
- cram::data_container::DataContainer
- cram::data_container::Slice
- cram::file_definition::FileDefinition
- cram::file_definition::Version
- cram::reader::Reader
- cram::reader::Records
- cram::record::Builder
- cram::record::Flags
- cram::record::NextMateFlags
- cram::record::ReadGroupId
- cram::record::Record
- cram::record::Tag
- cram::record::feature::code::TryFromCharError
- cram::record::tag::Key
- cram::record::tag::Tag
- csi::Index
- csi::Reader
- csi::Writer
- csi::index::Builder
- csi::index::Index
- csi::index::ReferenceSequence
- csi::index::reference_sequence::Bin
- csi::index::reference_sequence::Metadata
- csi::index::reference_sequence::ReferenceSequence
- csi::index::reference_sequence::bin::Bin
- csi::index::reference_sequence::bin::Chunk
- fasta::Reader
- fasta::Record
- fasta::Writer
- fasta::fai::Reader
- fasta::fai::Record
- fasta::fai::Writer
- fasta::reader::Reader
- fasta::reader::Records
- fasta::record::Definition
- fasta::record::Record
- fasta::record::definition::Definition
- fastq::Indexer
- fastq::Reader
- fastq::Record
- fastq::Writer
- fastq::fai::Reader
- fastq::fai::Record
- fastq::fai::Writer
- gff::Reader
- gff::Record
- gff::Writer
- gff::directive::GenomeBuild
- gff::directive::GffVersion
- gff::directive::SequenceRegion
- gff::directive::genome_build::GenomeBuild
- gff::directive::gff_version::GffVersion
- gff::directive::sequence_region::SequenceRegion
- gff::reader::Lines
- gff::reader::Reader
- gff::reader::Records
- gff::record::Attributes
- gff::record::Builder
- gff::record::Record
- gff::record::attributes::Attributes
- gff::record::attributes::Entry
- gff::record::attributes::entry::Entry
- sam::Header
- sam::Reader
- sam::Record
- sam::Writer
- sam::header::Builder
- sam::header::Header
- sam::header::Program
- sam::header::ReadGroup
- sam::header::Record
- sam::header::ReferenceSequence
- sam::header::header::Builder
- sam::header::header::Header
- sam::header::header::Version
- sam::header::header::version::Version
- sam::header::program::Builder
- sam::header::program::Program
- sam::header::program::builder::Builder
- sam::header::read_group::Builder
- sam::header::read_group::ReadGroup
- sam::header::read_group::builder::Builder
- sam::header::record::Record
- sam::header::reference_sequence::AlternativeNames
- sam::header::reference_sequence::Builder
- sam::header::reference_sequence::Md5Checksum
- sam::header::reference_sequence::ReferenceSequence
- sam::header::reference_sequence::alternative_names::AlternativeNames
- sam::header::reference_sequence::builder::Builder
- sam::header::reference_sequence::md5_checksum::Md5Checksum
- sam::reader::Reader
- sam::reader::Records
- sam::record::Builder
- sam::record::Cigar
- sam::record::Data
- sam::record::Flags
- sam::record::MappingQuality
- sam::record::Position
- sam::record::QualityScores
- sam::record::ReadName
- sam::record::Record
- sam::record::ReferenceSequenceName
- sam::record::Sequence
- sam::record::builder::Builder
- sam::record::cigar::Cigar
- sam::record::cigar::Op
- sam::record::cigar::op::Op
- sam::record::cigar::op::kind::ParseError
- sam::record::data::Data
- sam::record::data::Field
- sam::record::data::field::Field
- sam::record::data::field::tag::ParseError
- sam::record::data::field::value::subtype::ParseError
- sam::record::data::field::value::ty::ParseError
- sam::record::position::Position
- sam::record::position::TryFromIntError
- sam::record::quality_scores::QualityScores
- sam::record::quality_scores::Score
- sam::record::quality_scores::score::Score
- sam::record::quality_scores::score::TryFromCharError
- sam::record::quality_scores::score::TryFromUByteError
- sam::record::read_name::ReadName
- sam::record::reference_sequence_name::ReferenceSequenceName
- sam::record::sequence::Sequence
- tabix::Index
- tabix::Reader
- tabix::Writer
- tabix::index::Builder
- tabix::index::Header
- tabix::index::Index
- tabix::index::Indexer
- tabix::index::ReferenceSequence
- tabix::index::builder::Builder
- tabix::index::header::Builder
- tabix::index::header::Header
- tabix::index::header::format::coordinate_system::TryFromIntError
- tabix::index::reference_sequence::Bin
- tabix::index::reference_sequence::ReferenceSequence
- tabix::index::reference_sequence::bin::Bin
- vcf::Header
- vcf::Reader
- vcf::Record
- vcf::Writer
- vcf::header::AlternativeAllele
- vcf::header::Builder
- vcf::header::Contig
- vcf::header::FileFormat
- vcf::header::Filter
- vcf::header::Format
- vcf::header::Header
- vcf::header::Info
- vcf::header::Meta
- vcf::header::Pedigree
- vcf::header::Record
- vcf::header::Sample
- vcf::header::alternative_allele::AlternativeAllele
- vcf::header::contig::Contig
- vcf::header::file_format::FileFormat
- vcf::header::filter::Filter
- vcf::header::format::Format
- vcf::header::format::ty::ParseError
- vcf::header::info::Info
- vcf::header::info::ty::ParseError
- vcf::header::meta::Meta
- vcf::header::pedigree::Pedigree
- vcf::header::record::Record
- vcf::header::sample::Sample
- vcf::reader::Query
- vcf::reader::Reader
- vcf::reader::Records
- vcf::record::AlternateBases
- vcf::record::Builder
- vcf::record::Format
- vcf::record::Genotype
- vcf::record::Ids
- vcf::record::Info
- vcf::record::Position
- vcf::record::QualityScore
- vcf::record::Record
- vcf::record::ReferenceBases
- vcf::record::alternate_bases::AlternateBases
- vcf::record::alternate_bases::allele::symbol::StructuralVariant
- vcf::record::alternate_bases::allele::symbol::structural_variant::StructuralVariant
- vcf::record::builder::Builder
- vcf::record::format::Format
- vcf::record::genotype::Field
- vcf::record::genotype::Genotype
- vcf::record::genotype::field::Field
- vcf::record::genotype::field::value::Genotype
- vcf::record::genotype::field::value::genotype::Allele
- vcf::record::genotype::field::value::genotype::Genotype
- vcf::record::genotype::field::value::genotype::allele::Allele
- vcf::record::ids::Ids
- vcf::record::info::Field
- vcf::record::info::Info
- vcf::record::info::field::Field
- vcf::record::position::Position
- vcf::record::position::TryFromIntError
- vcf::record::quality_score::QualityScore
- vcf::record::reference_bases::ReferenceBases
- vcf::record::reference_bases::base::TryFromCharError
Enums
- bam::bai::index::reference_sequence::QueryError
- bam::record::cigar::op::TryFromByteSliceError
- bam::record::cigar::op::TryFromUIntError
- bam::record::data::TryFromDataError
- bam::record::data::field::Value
- bam::record::data::field::value::Subtype
- bam::record::data::field::value::Type
- bam::record::data::field::value::Value
- bam::record::data::field::value::subtype::Subtype
- bam::record::data::field::value::ty::Type
- bam::record::sequence::Base
- bgzf::virtual_position::TryFromU64U16TupleError
- core::Region
- core::region::ParseError
- core::region::Region
- cram::crai::record::Field
- cram::crai::record::ParseError
- cram::record::Feature
- cram::record::feature::Code
- cram::record::feature::Feature
- cram::record::feature::code::Code
- cram::record::tag::TryFromTagError
- csi::index::reference_sequence::QueryError
- fasta::record::definition::ParseError
- gff::Directive
- gff::Line
- gff::directive::Directive
- gff::directive::ParseError
- gff::directive::genome_build::ParseError
- gff::directive::gff_version::ParseError
- gff::directive::sequence_region::ParseError
- gff::line::Line
- gff::line::ParseError
- gff::record::Field
- gff::record::ParseError
- gff::record::Phase
- gff::record::Strand
- gff::record::attributes::ParseError
- gff::record::attributes::entry::ParseError
- sam::header::ParseError
- sam::header::header::GroupOrder
- sam::header::header::SortOrder
- sam::header::header::SubsortOrder
- sam::header::header::Tag
- sam::header::header::TryFromRecordError
- sam::header::header::group_order::GroupOrder
- sam::header::header::group_order::ParseError
- sam::header::header::sort_order::ParseError
- sam::header::header::sort_order::SortOrder
- sam::header::header::subsort_order::ParseError
- sam::header::header::subsort_order::SubsortOrder
- sam::header::header::tag::ParseError
- sam::header::header::tag::Tag
- sam::header::header::version::ParseError
- sam::header::program::Tag
- sam::header::program::TryFromRecordError
- sam::header::program::builder::BuildError
- sam::header::program::tag::ParseError
- sam::header::program::tag::Tag
- sam::header::read_group::Platform
- sam::header::read_group::Tag
- sam::header::read_group::TryFromRecordError
- sam::header::read_group::builder::BuildError
- sam::header::read_group::platform::ParseError
- sam::header::read_group::platform::Platform
- sam::header::read_group::tag::ParseError
- sam::header::read_group::tag::Tag
- sam::header::record::Kind
- sam::header::record::ParseError
- sam::header::record::Value
- sam::header::record::kind::Kind
- sam::header::record::kind::ParseError
- sam::header::record::value::TryFromIteratorError
- sam::header::record::value::Value
- sam::header::reference_sequence::AlternativeLocus
- sam::header::reference_sequence::MoleculeTopology
- sam::header::reference_sequence::NewError
- sam::header::reference_sequence::Tag
- sam::header::reference_sequence::TryFromRecordError
- sam::header::reference_sequence::alternative_locus::AlternativeLocus
- sam::header::reference_sequence::alternative_locus::ParseError
- sam::header::reference_sequence::alternative_names::ParseError
- sam::header::reference_sequence::builder::BuildError
- sam::header::reference_sequence::md5_checksum::ParseError
- sam::header::reference_sequence::molecule_topology::MoleculeTopology
- sam::header::reference_sequence::molecule_topology::ParseError
- sam::header::reference_sequence::tag::ParseError
- sam::header::reference_sequence::tag::Tag
- sam::record::Field
- sam::record::ParseError
- sam::record::builder::BuildError
- sam::record::cigar::ParseError
- sam::record::cigar::op::Kind
- sam::record::cigar::op::ParseError
- sam::record::cigar::op::kind::Kind
- sam::record::data::ParseError
- sam::record::data::TryFromFieldVectorError
- sam::record::data::field::ParseError
- sam::record::data::field::Tag
- sam::record::data::field::Value
- sam::record::data::field::tag::Tag
- sam::record::data::field::value::ParseError
- sam::record::data::field::value::Subtype
- sam::record::data::field::value::Type
- sam::record::data::field::value::Value
- sam::record::data::field::value::subtype::Subtype
- sam::record::data::field::value::ty::Type
- sam::record::position::ParseError
- sam::record::quality_scores::ParseError
- sam::record::read_name::ParseError
- sam::record::reference_sequence_name::ParseError
- sam::record::sequence::Base
- sam::record::sequence::ParseError
- tabix::index::header::Format
- tabix::index::header::format::CoordinateSystem
- tabix::index::header::format::Format
- tabix::index::header::format::TryFromIntError
- tabix::index::header::format::coordinate_system::CoordinateSystem
- tabix::index::reference_sequence::QueryError
- vcf::header::Number
- vcf::header::ParseError
- vcf::header::alternative_allele::TryFromRecordError
- vcf::header::contig::TryFromRecordError
- vcf::header::file_format::ParseError
- vcf::header::filter::Key
- vcf::header::filter::TryFromRecordError
- vcf::header::filter::key::Key
- vcf::header::filter::key::ParseError
- vcf::header::format::Key
- vcf::header::format::TryFromRecordError
- vcf::header::format::Type
- vcf::header::format::key::Key
- vcf::header::format::key::ParseError
- vcf::header::format::ty::Type
- vcf::header::info::Key
- vcf::header::info::TryFromRecordError
- vcf::header::info::Type
- vcf::header::info::key::Key
- vcf::header::info::key::ParseError
- vcf::header::info::ty::Type
- vcf::header::meta::Key
- vcf::header::meta::TryFromRecordError
- vcf::header::meta::key::Key
- vcf::header::meta::key::ParseError
- vcf::header::pedigree::Key
- vcf::header::pedigree::TryFromRecordError
- vcf::header::pedigree::key::Key
- vcf::header::pedigree::key::ParseError
- vcf::header::record::Key
- vcf::header::record::ParseError
- vcf::header::record::Value
- vcf::header::record::key::Key
- vcf::header::record::key::ParseError
- vcf::header::sample::Key
- vcf::header::sample::TryFromRecordError
- vcf::header::sample::key::Key
- vcf::header::sample::key::ParseError
- vcf::record::Chromosome
- vcf::record::EndError
- vcf::record::Field
- vcf::record::Filters
- vcf::record::ParseError
- vcf::record::alternate_bases::Allele
- vcf::record::alternate_bases::ParseError
- vcf::record::alternate_bases::allele::Allele
- vcf::record::alternate_bases::allele::ParseError
- vcf::record::alternate_bases::allele::Symbol
- vcf::record::alternate_bases::allele::symbol::ParseError
- vcf::record::alternate_bases::allele::symbol::Symbol
- vcf::record::alternate_bases::allele::symbol::structural_variant::ParseError
- vcf::record::alternate_bases::allele::symbol::structural_variant::Type
- vcf::record::alternate_bases::allele::symbol::structural_variant::ty::ParseError
- vcf::record::alternate_bases::allele::symbol::structural_variant::ty::Type
- vcf::record::builder::BuildError
- vcf::record::chromosome::Chromosome
- vcf::record::chromosome::ParseError
- vcf::record::filters::Filters
- vcf::record::filters::ParseError
- vcf::record::filters::TryFromIteratorError
- vcf::record::format::ParseError
- vcf::record::format::TryFromKeyVectorError
- vcf::record::genotype::ParseError
- vcf::record::genotype::TryFromFieldsError
- vcf::record::genotype::field::Key
- vcf::record::genotype::field::ParseError
- vcf::record::genotype::field::Value
- vcf::record::genotype::field::key::Key
- vcf::record::genotype::field::key::ParseError
- vcf::record::genotype::field::value::ParseError
- vcf::record::genotype::field::value::Value
- vcf::record::genotype::field::value::genotype::ParseError
- vcf::record::genotype::field::value::genotype::allele::ParseError
- vcf::record::genotype::field::value::genotype::allele::Phasing
- vcf::record::genotype::field::value::genotype::allele::phasing::ParseError
- vcf::record::genotype::field::value::genotype::allele::phasing::Phasing
- vcf::record::ids::ParseError
- vcf::record::info::ParseError
- vcf::record::info::TryFromFieldsError
- vcf::record::info::field::Key
- vcf::record::info::field::ParseError
- vcf::record::info::field::Value
- vcf::record::info::field::key::Key
- vcf::record::info::field::key::ParseError
- vcf::record::info::field::value::ParseError
- vcf::record::info::field::value::Value
- vcf::record::position::ParseError
- vcf::record::quality_score::ParseError
- vcf::record::quality_score::TryFromFloatError
- vcf::record::reference_bases::Base
- vcf::record::reference_bases::ParseError
- vcf::record::reference_bases::TryFromBaseVectorError
- vcf::record::reference_bases::base::Base
Traits
- csi::BinningIndex
- csi::BinningIndexReferenceSequence
- csi::binning_index::BinningIndex
- csi::binning_index::BinningIndexReferenceSequence
Functions
- bam::bai::read
- bam::bai::write
- bam::reader::record::data::field::read_value
- cram::crai::read
- cram::index
- cram::record::resolve::resolve_bases
- cram::record::resolve::resolve_features
- csi::binning_index::merge_chunks
- csi::binning_index::optimize_chunks
- csi::read
- csi::write
- fasta::fai::read
- fasta::index
- fastq::index
- tabix::read
- tabix::write
Typedefs
- core::region::Interval
- cram::crai::Index
- fasta::fai::Index
- fastq::fai::Index
- sam::header::Programs
- sam::header::ReadGroups
- sam::header::ReferenceSequences
- sam::header::record::value::Fields
- tabix::index::ReferenceSequenceNames
- vcf::header::AlternativeAlleles
- vcf::header::Contigs
- vcf::header::Filters
- vcf::header::Formats
- vcf::header::Infos
- vcf::header::Pedigrees
- vcf::header::SampleNames
- vcf::header::Samples