Trait noodles_csi::binning_index::index::reference_sequence::index::Index

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pub trait Index {
    // Required methods
    fn min_offset(
        &self,
        min_shift: u8,
        depth: u8,
        start: Position
    ) -> VirtualPosition;
    fn last_first_start_position(&self) -> Option<VirtualPosition>;
    fn update(
        &mut self,
        min_shift: u8,
        depth: u8,
        start: Position,
        end: Position,
        chunk: Chunk
    );
}
Expand description

A binning index reference sequence index.

Required Methods§

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fn min_offset( &self, min_shift: u8, depth: u8, start: Position ) -> VirtualPosition

Returns the start virtual position of the first record in the bin that contains the given start position.

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fn last_first_start_position(&self) -> Option<VirtualPosition>

Returns the start virtual position of the last first record.

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fn update( &mut self, min_shift: u8, depth: u8, start: Position, end: Position, chunk: Chunk )

Adds a record to the index.

Implementors§