Struct noodles_core::region::Region

pub struct Region { /* private fields */ }

A genomic region.

Implementations

impl Region

pub fn new<N, I>(name: N, interval: I) -> Self

where N: Into<Vec<u8>>, I: Into<Interval>,

Creates a region.

Positions are assumed to be 1-based.

Examples

use noodles_core::{Region, Position};

let start = Position::try_from(5)?;
let end = Position::try_from(8)?;
let region = Region::new("sq0", start..=end);

pub fn name(&self) -> &[u8]

Returns the reference name of the region.

Examples

use noodles_core::{Position, Region};

let start = Position::try_from(5)?;
let end = Position::try_from(8)?;
let region = Region::new("sq0", start..=end);

assert_eq!(region.name(), b"sq0");

pub fn start(&self) -> Bound<Position>

Returns the start position of the region (1-based).

Examples

use noodles_core::{Position, Region};

let start = Position::try_from(5)?;
let region = Region::new("sq0", start..);

assert_eq!(region.start(), Bound::Included(start));

pub fn end(&self) -> Bound<Position>

Returns the end position of the region (1-based).

Examples

use noodles_core::{Position, Region};

let end = Position::try_from(8)?;
let region = Region::new("sq0", ..=end);

assert_eq!(region.end(), Bound::Included(end));

pub fn interval(&self) -> Interval

Returns the start and end positions as an interval.

Examples

use noodles_core::{region::Interval, Position, Region};

let start = Position::try_from(5)?;
let end = Position::try_from(8)?;
let region = Region::new("sq0", start..=end);

assert_eq!(region.interval(), Interval::from(start..=end));

Trait Implementations

impl Clone for Region

fn clone(&self) -> Region

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Region

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for Region

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromStr for Region

type Err = ParseError

The associated error which can be returned from parsing.

fn from_str(s: &str) -> Result<Self, Self::Err>

Parses a string s to return a value of this type.

impl PartialEq for Region

fn eq(&self, other: &Region) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for Region

impl StructuralEq for Region

impl StructuralPartialEq for Region