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//! A collection of structs and traits to interpolate data along the first axis
//!
//! # Interpolator
//! - [`Interp1D`] The interpolator used with any strategy
//! - [`Interp1DBuilder`] Configure the interpolator
//!
//! # Strategies
//! - [`Linear`] Linear interpolation strategy
//! - [`CubicSpline`] Cubic spline interpolation strategy
use std::{fmt::Debug, ops::Sub};
use ndarray::{
s, Array, ArrayBase, ArrayView, Axis, AxisDescription, Data, DimAdd, Dimension, IntoDimension,
Ix1, NdIndex, OwnedRepr, RemoveAxis, Slice,
};
use num_traits::{cast, Num, NumCast};
use crate::{
vector_extensions::{Monotonic, VectorExtensions},
BuilderError, InterpolateError,
};
mod strategies;
pub use strategies::{CubicSpline, Linear, Strategy, StrategyBuilder};
/// One dimensional interpolator
#[derive(Debug)]
pub struct Interp1D<Sd, Sx, D, Strat>
where
Sd: Data,
Sd::Elem: Num + Debug,
Sx: Data<Elem = Sd::Elem>,
D: Dimension,
Strat: Strategy<Sd, Sx, D>,
{
/// x values are guaranteed to be strict monotonically rising
/// if x is None, the x values are assumed to be the index of data
x: Option<ArrayBase<Sx, Ix1>>,
data: ArrayBase<Sd, D>,
strategy: Strat,
range: (Sx::Elem, Sx::Elem),
}
impl<Sd, Sx, Strat> Interp1D<Sd, Sx, Ix1, Strat>
where
Sd: Data,
Sd::Elem: Num + PartialOrd + NumCast + Copy + Debug + Sub,
Sx: Data<Elem = Sd::Elem>,
Strat: Strategy<Sd, Sx, Ix1>,
{
/// convinient interpolation function for interpolation at one point
/// when the data dimension is [`type@Ix1`]
///
/// ```rust
/// # use ndarray_interp::*;
/// # use ndarray_interp::interp1d::*;
/// # use ndarray::*;
/// # use approx::*;
/// let data = array![1.0, 1.5, 2.0];
/// let x = array![1.0, 2.0, 3.0];
/// let query = 1.5;
/// let expected = 1.25;
///
/// let interpolator = Interp1DBuilder::new(data).x(x).build().unwrap();
/// let result = interpolator.interp_scalar(query).unwrap();
/// # assert_eq!(result, expected);
/// ```
pub fn interp_scalar(&self, x: Sx::Elem) -> Result<Sd::Elem, InterpolateError> {
Ok(*self.interp(x)?.first().unwrap_or_else(|| unreachable!()))
}
}
impl<Sd, D> Interp1D<Sd, OwnedRepr<Sd::Elem>, D, Linear>
where
Sd: Data,
Sd::Elem: Num + PartialOrd + NumCast + Copy + Debug,
D: Dimension + RemoveAxis,
{
/// Get the [Interp1DBuilder]
pub fn builder(data: ArrayBase<Sd, D>) -> Interp1DBuilder<Sd, OwnedRepr<Sd::Elem>, D, Linear> {
Interp1DBuilder::new(data)
}
}
impl<Sd, Sx, D, Strat> Interp1D<Sd, Sx, D, Strat>
where
Sd: Data,
Sd::Elem: Num + PartialOrd + NumCast + Copy + Debug + Sub,
Sx: Data<Elem = Sd::Elem>,
D: Dimension + RemoveAxis,
Strat: Strategy<Sd, Sx, D>,
{
/// Calculate the interpolated values at `x`.
/// Returns the interpolated data in an array one dimension smaller than
/// the data dimension.
///
/// ```rust
/// # use ndarray_interp::*;
/// # use ndarray_interp::interp1d::*;
/// # use ndarray::*;
/// # use approx::*;
/// // data has 2 dimension:
/// let data = array![
/// [0.0, 2.0, 4.0],
/// [0.5, 2.5, 3.5],
/// [1.0, 3.0, 3.0],
/// ];
/// let query = 0.5;
/// let expected = array![0.25, 2.25, 3.75];
///
/// let interpolator = Interp1DBuilder::new(data).build().unwrap();
/// let result = interpolator.interp(query).unwrap();
/// # assert_abs_diff_eq!(result, expected, epsilon=f64::EPSILON);
/// ```
///
/// Concider using [`interp_scalar(x)`](Interp1D::interp_scalar)
/// when the data dimension is [`type@Ix1`]
pub fn interp(&self, x: Sx::Elem) -> Result<Array<Sd::Elem, D::Smaller>, InterpolateError> {
let dim = self.data.raw_dim().remove_axis(Axis(0));
let mut target: Array<Sd::Elem, _> = Array::zeros(dim);
self.strategy
.interp_into(self, target.view_mut(), x)
.map(|_| target)
}
/// Calculate the interpolated values at all points in `xs`
///
/// ```rust
/// # use ndarray_interp::*;
/// # use ndarray_interp::interp1d::*;
/// # use ndarray::*;
/// # use approx::*;
/// let data = array![0.0, 0.5, 1.0 ];
/// let x = array![0.0, 1.0, 2.0 ];
/// let query = array![0.5, 1.0, 1.5 ];
/// let expected = array![0.25, 0.5, 0.75];
///
/// let interpolator = Interp1DBuilder::new(data)
/// .x(x)
/// .strategy(Linear{extrapolate: false})
/// .build().unwrap();
/// let result = interpolator.interp_array(&query).unwrap();
/// # assert_abs_diff_eq!(result, expected, epsilon=f64::EPSILON);
/// ```
///
/// # Dimensions
/// given the data dimension is `N` and the dimension of `xs` is `M`
/// the return array will have dimension `M + N - 1` where the first
/// `M` dimensions correspond to the dimensions of `xs`.
///
/// ```rust
/// # use ndarray_interp::*;
/// # use ndarray_interp::interp1d::*;
/// # use ndarray::*;
/// # use approx::*;
/// // data has 2 dimension:
/// let data = array![
/// [0.0, 2.0],
/// [0.5, 2.5],
/// [1.0, 3.0],
/// ];
/// let x = array![
/// 0.0,
/// 1.0,
/// 2.0,
/// ];
/// // query with 2 dimensions:
/// let query = array![
/// [0.0, 0.5],
/// [1.0, 1.5],
/// ];
/// // expecting 3 dimensions!
/// let expected = array![
/// [[0.0, 2.0], [0.25, 2.25]], // result for x=[0.0, 0.5]
/// [[0.5, 2.5], [0.75, 2.75]], // result for x=[1.0, 1.5]
/// ];
///
/// let interpolator = Interp1DBuilder::new(data)
/// .x(x)
/// .strategy(Linear{extrapolate: false})
/// .build().unwrap();
/// let result = interpolator.interp_array(&query).unwrap();
/// # assert_abs_diff_eq!(result, expected, epsilon=f64::EPSILON);
/// ```
pub fn interp_array<Dq>(
&self,
xs: &ArrayBase<Sx, Dq>,
) -> Result<Array<Sd::Elem, <Dq as DimAdd<D::Smaller>>::Output>, InterpolateError>
where
D: RemoveAxis,
Dq: Dimension + DimAdd<D::Smaller>,
Dq::Pattern: NdIndex<Dq>,
{
let mut dim = <Dq as DimAdd<D::Smaller>>::Output::default();
dim.as_array_view_mut()
.into_iter()
.zip(
xs.shape()
.iter()
.chain(self.data.raw_dim().as_array_view().slice(s![1..])),
)
.for_each(|(new_axis, len)| {
*new_axis = *len;
});
let mut ys = Array::zeros(dim);
// Perform interpolation for each index
for (index, &x) in xs.indexed_iter() {
let current_dim = index.clone().into_dimension();
let subview =
ys.slice_each_axis_mut(|AxisDescription { axis: Axis(nr), .. }| match current_dim
.as_array_view()
.get(nr)
{
Some(idx) => Slice::from(*idx..*idx + 1),
None => Slice::from(..),
});
self.strategy.interp_into(
self,
subview
.into_shape(self.data.raw_dim().remove_axis(Axis(0)))
.unwrap_or_else(|_| unreachable!()),
x,
)?;
}
Ok(ys)
}
/// get `(x, data)` coordinate at given index
///
/// # panics
/// when index out of bounds
pub fn index_point(&self, index: usize) -> (Sx::Elem, ArrayView<Sd::Elem, D::Smaller>) {
let view = self.data.index_axis(Axis(0), index);
match &self.x {
Some(x) => (*x.get(index).unwrap_or_else(|| unreachable!()), view),
None => (NumCast::from(index).unwrap_or_else(|| unreachable!()), view),
}
}
/// linearly interpolate/exrapolate between two points
fn calc_frac(
(x1, y1): (Sx::Elem, Sd::Elem),
(x2, y2): (Sx::Elem, Sd::Elem),
x: Sx::Elem,
) -> Sx::Elem {
let b = y1;
let m = (y2 - y1) / (x2 - x1);
m * (x - x1) + b
}
/// The index of a known value left of, or at x.
///
/// This will never return the right most index,
/// so calling [`index_point(idx+1)`](Interp1D::index_point) is always safe.
pub fn get_index_left_of(&self, x: Sx::Elem) -> usize {
if let Some(xs) = &self.x {
// the x axis is given so we need to search for the index, and can not calculate it.
// the x axis is guaranteed to be strict monotonically rising.
// We assume that the spacing is even. So we can calculate the index
// and check it. This finishes in O(1) for even spaced axis.
// Otherwise we do a binary search with O(log n)
let mut range = (0usize, xs.len() - 1);
while range.0 + 1 < range.1 {
let p1 = (
*xs.get(range.0).unwrap_or_else(|| unreachable!()),
NumCast::from(range.0).unwrap_or_else(|| {
unimplemented!("casting from usize should always work!")
}),
);
let p2 = (
*xs.get(range.1).unwrap_or_else(|| unreachable!()),
NumCast::from(range.1).unwrap_or_else(|| {
unimplemented!("casting from usize should always work!")
}),
);
let mid = Self::calc_frac(p1, p2, x);
if mid < NumCast::from(0).unwrap_or_else(|| unimplemented!()) {
// neagtive values might occure when extrapolating index 0 is
// the guaranteed solution
return 0;
}
let mut mid_idx: usize = NumCast::from(mid).unwrap_or_else(|| {
unimplemented!("mid is positive, so this should work always")
});
if mid_idx == range.1 {
mid_idx -= 1;
};
let mut mid_x = xs.get(mid_idx).unwrap_or_else(|| unreachable!());
if mid_x <= &x && x <= *xs.get(mid_idx + 1).unwrap_or_else(|| unreachable!()) {
return mid_idx;
}
if mid_x < &x {
range.0 = mid_idx;
} else {
range.1 = mid_idx;
}
// the above alone has the potential to end in an infinte loop
// do a binary search step to guarantee progress
mid_idx = (range.1 - range.0) / 2 + range.0;
mid_x = xs.get(mid_idx).unwrap_or_else(|| unreachable!());
if mid_x == &x {
return mid_idx;
}
if mid_x < &x {
range.0 = mid_idx;
} else {
range.1 = mid_idx;
}
}
range.0
} else if x < NumCast::from(0).unwrap_or_else(|| unimplemented!()) {
0
} else {
// this relies on the fact that float -> int cast will return the next lower int
// for positive values
let x = NumCast::from(x)
.unwrap_or_else(|| unimplemented!("x is positive, so this should always work"));
if x >= self.data.raw_dim()[0] - 1 {
self.data.raw_dim()[0] - 2
} else {
x
}
}
}
}
/// Create and configure a [Interp1D] Interpolator.
/// # Default configuration
/// In the default configuration the interpolation strategy is [`Linear{extrapolate: false}`].
/// The data will be interpolated along [`Axis(0)`] (currently this can not be changed).
/// The index to `Axis(0)` of the data will be used as x values.
#[derive(Debug)]
pub struct Interp1DBuilder<Sd, Sx, D, Strat>
where
Sd: Data,
Sd::Elem: Num + Debug,
Sx: Data<Elem = Sd::Elem>,
D: Dimension,
{
x: Option<ArrayBase<Sx, Ix1>>,
data: ArrayBase<Sd, D>,
strategy: Strat,
}
impl<Sd, D> Interp1DBuilder<Sd, OwnedRepr<Sd::Elem>, D, Linear>
where
Sd: Data,
Sd::Elem: Num + PartialOrd + NumCast + Copy + Debug,
D: Dimension,
{
/// Create a new [Interp1DBuilder] and provide the data to interpolate.
/// When nothing else is configured [Interp1DBuilder::build] will create an Interpolator using
/// Linear Interpolation without extrapolation. As x axis the index to the data will be used.
/// On multidimensional data interpolation happens along the first axis.
pub fn new(data: ArrayBase<Sd, D>) -> Self {
Interp1DBuilder {
x: None,
data,
strategy: Linear { extrapolate: false },
}
}
}
impl<Sd, Sx, D, Strat> Interp1DBuilder<Sd, Sx, D, Strat>
where
Sd: Data,
Sd::Elem: Num + PartialOrd + NumCast + Copy + Debug,
Sx: Data<Elem = Sd::Elem>,
D: Dimension,
Strat: StrategyBuilder<Sd, Sx, D>,
{
/// Add an custom x axis for the data. The axis needs to have the same lenght
/// and store the same Type as the data. `x` must be strict monotonic rising.
/// If the x axis is not set the index `0..data.len() - 1` is used
pub fn x<NewSx>(self, x: ArrayBase<NewSx, Ix1>) -> Interp1DBuilder<Sd, NewSx, D, Strat>
where
NewSx: Data<Elem = Sd::Elem>,
{
let Interp1DBuilder { data, strategy, .. } = self;
Interp1DBuilder {
x: Some(x),
data,
strategy,
}
}
/// Set the interpolation strategy by providing a [StrategyBuilder].
/// By default [Linear] with `Linear{extrapolate: false}` is used.
pub fn strategy<NewStrat>(self, strategy: NewStrat) -> Interp1DBuilder<Sd, Sx, D, NewStrat>
where
NewStrat: StrategyBuilder<Sd, Sx, D>,
{
let Interp1DBuilder { x, data, .. } = self;
Interp1DBuilder { x, data, strategy }
}
/// Validate input data and create the configured [Interp1D]
pub fn build(self) -> Result<Interp1D<Sd, Sx, D, Strat::FinishedStrat>, BuilderError> {
let &len = self
.data
.raw_dim()
.as_array_view()
.get(0)
.ok_or(BuilderError::DimensionError("data dimension is 0".into()))?;
if len < Strat::MINIMUM_DATA_LENGHT {
return Err(BuilderError::NotEnoughData(format!(
"The chosen Interpolation strategy needs at least {} data points",
Strat::MINIMUM_DATA_LENGHT
)));
};
if let Some(x) = &self.x {
match x.monotonic_prop() {
Monotonic::Rising { strict: true } => Ok(()),
_ => Err(BuilderError::Monotonic(
"Values in the x axis need to be strictly monotonic rising".into(),
)),
}?;
if *self
.data
.raw_dim()
.as_array_view()
.get(0)
.unwrap_or_else(|| unreachable!())
!= x.len()
{
return Err(BuilderError::AxisLenght(format!(
"Lengths of x and data axis need to match. Got x: {:}, data: {:}",
x.len(),
self.data.len()
)));
};
}
let range = match &self.x {
Some(x) => (
*x.first().unwrap_or_else(|| unreachable!()),
*x.last().unwrap_or_else(|| unreachable!()),
),
None => (
NumCast::from(0).unwrap_or_else(|| unimplemented!()),
NumCast::from(self.data.len() - 1).unwrap_or_else(|| unimplemented!()),
),
};
let strategy = match self.x.as_ref() {
Some(x) => self.strategy.build(x, &self.data)?,
None => {
let len = self.data.raw_dim()[0];
let x = Array::from_iter((0..len).map(|n| {
cast(n).unwrap_or_else(|| {
unimplemented!("casting from usize to a number should always work")
})
}));
self.strategy.build(&x, &self.data)?
}
};
Ok(Interp1D {
x: self.x,
data: self.data,
strategy,
range,
})
}
}