nd2_rs/types/
metadata.rs

1use serde::{Deserialize, Serialize};
2
3use super::PixelDataType;
4
5#[derive(Debug, Clone, PartialEq, Serialize, Deserialize)]
6pub struct Metadata {
7    pub contents: Option<Contents>,
8    pub channels: Option<Vec<Channel>>,
9}
10
11#[derive(Debug, Clone, PartialEq, Serialize, Deserialize)]
12pub struct Contents {
13    pub channel_count: u32,
14    pub frame_count: u32,
15}
16
17#[derive(Debug, Clone, PartialEq, Serialize, Deserialize)]
18pub struct Channel {
19    pub channel: ChannelMeta,
20    pub loops: Option<LoopIndices>,
21    pub microscope: Microscope,
22    pub volume: Volume,
23}
24
25#[derive(Debug, Clone, PartialEq, Serialize, Deserialize)]
26pub struct ChannelMeta {
27    pub name: String,
28    pub index: u32,
29    pub color: Color,
30    pub emission_lambda_nm: Option<f64>,
31    pub excitation_lambda_nm: Option<f64>,
32}
33
34#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
35pub struct Color {
36    pub r: u8,
37    pub g: u8,
38    pub b: u8,
39    pub a: u8,
40}
41
42impl Color {
43    pub fn from_abgr_u32(val: u32) -> Self {
44        Self {
45            r: (val & 0xFF) as u8,
46            g: ((val >> 8) & 0xFF) as u8,
47            b: ((val >> 16) & 0xFF) as u8,
48            a: ((val >> 24) & 0xFF) as u8,
49        }
50    }
51
52    pub fn as_hex(&self) -> String {
53        format!("#{:02x}{:02x}{:02x}", self.r, self.g, self.b)
54    }
55}
56
57#[derive(Debug, Clone, PartialEq, Serialize, Deserialize)]
58pub struct LoopIndices {
59    pub ne_time_loop: Option<u32>,
60    pub time_loop: Option<u32>,
61    pub xy_pos_loop: Option<u32>,
62    pub z_stack_loop: Option<u32>,
63    pub custom_loop: Option<u32>,
64}
65
66#[derive(Debug, Clone, PartialEq, Serialize, Deserialize)]
67pub struct Microscope {
68    pub objective_magnification: Option<f64>,
69    pub objective_name: Option<String>,
70    pub objective_numerical_aperture: Option<f64>,
71    pub zoom_magnification: Option<f64>,
72    pub immersion_refractive_index: Option<f64>,
73    pub projective_magnification: Option<f64>,
74    pub pinhole_diameter_um: Option<f64>,
75}
76
77#[derive(Debug, Clone, PartialEq, Serialize, Deserialize)]
78pub struct Volume {
79    pub axes_calibrated: (bool, bool, bool),
80    pub axes_calibration: (f64, f64, f64),
81    pub axes_interpretation: (AxisInterpretation, AxisInterpretation, AxisInterpretation),
82    pub bits_per_component_in_memory: u32,
83    pub bits_per_component_significant: u32,
84    pub camera_transformation_matrix: (f64, f64, f64, f64),
85    pub component_count: u32,
86    pub component_data_type: PixelDataType,
87    pub voxel_count: (u32, u32, u32),
88    pub component_maxima: Option<Vec<f64>>,
89    pub component_minima: Option<Vec<f64>>,
90    pub pixel_to_stage_transformation_matrix: Option<(f64, f64, f64, f64, f64, f64)>,
91}
92
93#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
94#[serde(rename_all = "lowercase")]
95pub enum AxisInterpretation {
96    Distance,
97    Time,
98}
nd2_rs/types/metadata.rs

nd2_rs/types/
metadata.rs
