Crate na_seq

Modules

• amino_acids
• ligation
  This module contains code related to ligation. For example, using restriction enzymes to combine or otherwise edit DNA segments.
• re_lib
  This module loads a library of Restriction enzymes.
• restriction_enzyme
  This module contains info related to Restriction Enzyme sites.

Structs

• IndexError

Enums

• Nucleotide
  A DNA nucleotide. The u8 repr is for use with a compact binary format. This is the same nucleotide mapping as .2bit format.
• SeqTopology

Functions

• calc_gc
  Calculate portion of a sequence that is either the G or C nucleotide, on a scale of 0 to 1.
• deser_seq_bin
  A compact binary deserialization of our sequence. Useful for file storage. The first four bytes is sequence length, big endian; we need this, since one of our nucleotides necessarily serializes to 0b00. todo: Is this MSB or LSB?
• insert_into_seq
  Insert a segment of one sequence into another. For example, for cloning. Note that insert_loc uses 1-based indexing.
• seq_aa_from_str
  Create an amino-acid sequence from a string of single-letter identifiers. (Case insensitive)
• seq_aa_to_str
  Convert a nucleotide sequence to string.
• seq_complement
  Reverse direction, and swap C for G, A for T.
• seq_from_str
  Create a nucleotide sequence from a string. (Case insensitive)
• seq_to_letter_bytes
  Convert a string to bytes associated with ASCII letters. For compatibility with external libraries.
• seq_to_str
  Convert a nucleotide sequence to string.
• seq_weight
  Sequence weight, in Daltons. Assumes single-stranded.
• serialize_seq_bin
  A compact binary serialization of our sequence. Useful for file storage. The first four bytes is sequence length, big endian; we need this, since one of our nucleotides necessarily serializes to 0b00.

Type Aliases

• Seq