Crate na_seq

Modules§

ligation
This module contains code related to ligation. For example, using restriction enzymes to combine or otherwise edit DNA segments.
re_lib
This module loads a library of Restriction enzymes.
restriction_enzyme
This module contains info related to Restriction Enzyme sites.

Nucleotide
A DNA nucleotide. The u8 repr is for use with a compact binary format. This is the same nucleotide mapping as .2bit format.
SeqTopology

calc_gc
Calculate portion of a sequence that is either the G or C nucleotide, on a scale of 0 to 1.
deser_seq_bin
A compact binary deserialization of our sequence. Useful for file storage. The first four bytes is sequence length, big endian; we need this, since one of our nucleotides necessarily serializes to 0b00. todo: Is this MSB or LSB?
insert_into_seq
Insert a segment of one sequence into another. For example, for cloning. Note that insert_loc uses 1-based indexing.
seq_complement
Reverse direction, and swap C for G, A for T.
seq_from_str
seq_to_letter_bytes
Convert a string to bytes associated with ASCII letters. For compatibility with external libraries.
seq_to_str
Convert a nucleotide sequence to string.
seq_weight
Sequence weight, in Daltons. Assumes single-stranded.
serialize_seq_bin
A compact binary serialization of our sequence. Useful for file storage. The first four bytes is sequence length, big endian; we need this, since one of our nucleotides necessarily serializes to 0b00.