Crate na_seq 

Re-exports

pub use crate::amino_acids::AaCategory;

pub use crate::amino_acids::AaIdent;

pub use crate::amino_acids::AminoAcid;

pub use crate::amino_acids::AminoAcidGeneral;

pub use crate::amino_acids::AminoAcidProtenationVariant;

pub use crate::amino_acids::CodingResult;

pub use crate::element::AtomTypeInRes;

pub use crate::element::Element;

pub use crate::nucleotide::Nucleotide;

pub use crate::nucleotide::NucleotideGeneral;

pub use crate::restriction_enzyme::RestrictionEnzyme;

Modules

amino_acids

element

ligation

This module contains code related to ligation. For example, using restriction enzymes to combine or otherwise edit DNA segments.

nucleotide

This module contains types and functions for working with nucleotides.

re_lib

This module loads a library of Restriction enzymes.

restriction_enzyme

This module contains info related to Restriction Enzyme sites.

Structs

IndexError

Enums

SeqTopology

Functions

calc_gc

Calculate portion of a sequence that is either the G or C nucleotide, on a scale of 0 to 1.

deser_seq_bin

A compact binary deserialization of our sequence. Useful for file storage. The first four bytes is sequence length, big endian; we need this, since one of our nucleotides necessarily serializes to 0b00.

insert_into_seq

Insert a segment of one sequence into another. For example, for cloning. Note that insert_loc uses 1-based indexing.

seq_aa_from_str

Create an amino-acid sequence from a string of single-letter identifiers. (Case insensitive)

seq_aa_to_str

Convert an amino acid sequence to string of single-letter idents.

seq_aa_to_u8_lower

Convert a string to bytes associated with UTF-8 letters. For compatibility with external libraries.

seq_aa_to_u8_upper

Convert a sequence of amino acids to bytes associated with UTF-8 letters. For compatibility with external libraries.

seq_complement

Reverse direction, and swap C for G, A for T.

seq_from_str

Create a nucleotide sequence from a string. (Case insensitive)

seq_to_str_lower

Convert a nucleotide sequence to string.

seq_to_str_upper

Convert a nucleotide sequence to string.

seq_to_u8_lower

Convert a sequence of amino acids to bytes associated with UTF-8 letters. For compatibility with external libraries.

seq_to_u8_upper

Convert a sequence to bytes associated with UTF-8 letters. For compatibility with external libraries.

seq_weight

Sequence weight, in Daltons. Assumes single-stranded.

serialize_seq_bin

A compact binary serialization of our sequence. Useful for file storage. The first four bytes is sequence length, big endian; we need this, since one of our nucleotides necessarily serializes to 0b00.

Type Aliases

Seq