Crate n5

Interfaces for the N5 “Not HDF5” n-dimensional tensor file system storage format created by the Saalfeld lab at Janelia Research Campus.

Re-exports

pub extern crate smallvec;

pub use data_type::*;

Modules

compression

Compression for block voxel data.

data_type

filesystem

A filesystem-backed N5 container.

ndarray

prelude

N5 prelude.

Macros

data_type_match

Match a DataType-valued expression, and in each arm repeat the provided code block with the token RsType replaced with the primitive type appropriate for that arm.

data_type_rstype_replace

Replace all RsType tokens with the provide type.

Structs

BlockHeader

Unencoded, non-payload header of a data block.

DataBlockMetadata

Container metadata about a data block.

DatasetAttributes

Attributes of a tensor dataset.

DefaultBlock

SliceDataBlock

A generic data block container wrapping any type that can be taken as a slice ref.

Version

Represents a version number conforming to the semantic versioning scheme.

Constants

VERSION

Version of the Java N5 spec supported by this library.

VERSION_ATTRIBUTE_KEY

Key name for the version attribute in the container root.

Traits

DataBlock

Common interface for data blocks of element (rust) type T.

DefaultBlockHeaderReader

DefaultBlockReader

Reads blocks from rust readers.

DefaultBlockWriter

Writes blocks to rust writers.

N5Lister

Non-mutating operations on N5 containers that support group discoverability.

N5Reader

Non-mutating operations on N5 containers.

N5Writer

Mutating operations on N5 containers.

ReadableDataBlock

Traits for data blocks that can read in data.

ReinitDataBlock

Traits for data blocks that can be reused as a different blocks after construction.

WriteableDataBlock

Traits for data blocks that can write out data.

Functions

is_version_compatible

Determines whether a version of an N5 implementation is capable of accessing a version of an N5 container (other).

Type Aliases

BlockCoord

CoordVec

GridCoord

VecDataBlock

A linear vector storing a data block. All read data blocks are returned as this type.