Crate motifscan 

Library entry module that wires together CLI parsing, thread-pool setup, and scan execution.

Modules

cli

Command-line interface module that parses user input into typed configuration.

io

Streaming input module that parses FASTA, FASTQ, and their gzip-compressed variants.

motif

Motif parsing and compilation module that loads CSV input, validates sequences, and prepares forward/reverse-complement patterns.

output

Output module responsible for serializing scan results into stable CSV files.

scanner

Scan-engine module responsible for parallel record processing, exact motif matching, and result aggregation.

Functions

run

Runs the main application flow.