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Crate molrs_io

Crate molrs_io 

Source
Expand description

File I/O for molecular data, organized by content kind:

  • data — single-structure formats (PDB, XYZ, GRO, mol2, SDF, CIF, LAMMPS data, CHGCAR/POSCAR, Cube)
  • trajectory — multi-frame formats (DCD, LAMMPS dump)
  • store — persistence backends (Zarr V3, feature zarr)
  • reader / writer / streaming — shared traits and the chunk-based frame-indexing infrastructure
  • [smiles] — SMILES/SMARTS notation parsing (feature smiles)

Modules§

data
Single-structure data file formats: PDB, XYZ, GRO, mol2, SDF, CIF, LAMMPS data, and VASP/Gaussian grid formats (CHGCAR, POSCAR, Cube).
reader
store
Persistence backends for trajectory storage (Zarr V3).
streaming
Streaming frame indexers shared across all trajectory formats.
trajectory
Multi-frame trajectory formats: DCD and LAMMPS dump.
writer