Expand description
File I/O for molecular data, organized by content kind:
data— single-structure formats (PDB, XYZ, GRO, mol2, SDF, CIF, LAMMPS data, CHGCAR/POSCAR, Cube)trajectory— multi-frame formats (DCD, LAMMPS dump)store— persistence backends (Zarr V3, featurezarr)reader/writer/streaming— shared traits and the chunk-based frame-indexing infrastructure- [
smiles] — SMILES/SMARTS notation parsing (featuresmiles)
Modules§
- data
- Single-structure data file formats: PDB, XYZ, GRO, mol2, SDF, CIF, LAMMPS data, and VASP/Gaussian grid formats (CHGCAR, POSCAR, Cube).
- reader
- store
- Persistence backends for trajectory storage (Zarr V3).
- streaming
- Streaming frame indexers shared across all trajectory formats.
- trajectory
- Multi-frame trajectory formats: DCD and LAMMPS dump.
- writer