Crate mm2

Modules

• bam_writer
• params

Structs

• AlignResult

Functions

• align_single_query_to_targets
• align_worker
• build_aligner
• build_bam_record_from_mapping
• convert_mapping_cigar_to_record_cigar
  if reverse alignment, the cigar will be reversed!
• query_seq_sender
• set_primary_alignment
  for multi target scenerio, the primary alignment will be the alignment that has max matched bases
• targets_to_targetsidx
  {“target_name”: (idx, length)}

Type Aliases

• BamReader
• BamRecord
• BamWriter