Crate minimap2

Structs

Aligner

Aligner struct, mimicking minimap2’s python interface

Alignment

Alignment struct when alignment flag is set

Fasta

Fastq

Mapping

Mapping result

Sequence

Enums

AlignmentType

Alignment type

CompressionType

FileFormat

Preset

Preset’s for minimap2 config

Strand

Strand enum

Functions

asm

Ergonomic function for Aligner. Just to see if people prefer this over the preset() function.

asm5

Ergonomic function for Aligner. Just to see if people prefer this over the preset() function.

asm10

Ergonomic function for Aligner. Just to see if people prefer this over the preset() function.

asm20

Ergonomic function for Aligner. Just to see if people prefer this over the preset() function.

ava_ont

Ergonomic function for Aligner. Just to see if people prefer this over the preset() function.

ava_pb

Ergonomic function for Aligner. Just to see if people prefer this over the preset() function.

cdna

Ergonomic function for Aligner. Just to see if people prefer this over the preset() function.

detect_compression_format

Return the compression type of a file

detect_file_format

map10k

Ergonomic function for Aligner. Just to see if people prefer this over the preset() function.

map_hifi

Ergonomic function for Aligner. Just to see if people prefer this over the preset() function.

map_ont

Ergonomic function for Aligner. Just to see if people prefer this over the preset() function.

preset

Ergonomic function for Aligner.

short

Ergonomic function for Aligner. Just to see if people prefer this over the preset() function.

splice

Ergonomic function for Aligner. Just to see if people prefer this over the preset() function.

sr

Ergonomic function for Aligner. Just to see if people prefer this over the preset() function.

Type Definitions

IdxOpt

Alias for mm_idxopt_t

MapOpt

Alias for mm_mapop_t