pub type MapOpt = mm_mapopt_t;Expand description
Alias for mm_mapop_t
Aliased Type§
struct MapOpt {Show 58 fields
pub flag: i64,
pub seed: i32,
pub sdust_thres: i32,
pub max_qlen: i32,
pub bw: i32,
pub bw_long: i32,
pub max_gap: i32,
pub max_gap_ref: i32,
pub max_frag_len: i32,
pub max_chain_skip: i32,
pub max_chain_iter: i32,
pub min_cnt: i32,
pub min_chain_score: i32,
pub chain_gap_scale: f32,
pub chain_skip_scale: f32,
pub rmq_size_cap: i32,
pub rmq_inner_dist: i32,
pub rmq_rescue_size: i32,
pub rmq_rescue_ratio: f32,
pub mask_level: f32,
pub mask_len: i32,
pub pri_ratio: f32,
pub best_n: i32,
pub alt_drop: f32,
pub a: i32,
pub b: i32,
pub q: i32,
pub e: i32,
pub q2: i32,
pub e2: i32,
pub transition: i32,
pub sc_ambi: i32,
pub noncan: i32,
pub junc_bonus: i32,
pub zdrop: i32,
pub zdrop_inv: i32,
pub end_bonus: i32,
pub min_dp_max: i32,
pub min_ksw_len: i32,
pub anchor_ext_len: i32,
pub anchor_ext_shift: i32,
pub max_clip_ratio: f32,
pub rank_min_len: i32,
pub rank_frac: f32,
pub pe_ori: i32,
pub pe_bonus: i32,
pub mid_occ_frac: f32,
pub q_occ_frac: f32,
pub min_mid_occ: i32,
pub max_mid_occ: i32,
pub mid_occ: i32,
pub max_occ: i32,
pub max_max_occ: i32,
pub occ_dist: i32,
pub mini_batch_size: i64,
pub max_sw_mat: i64,
pub cap_kalloc: i64,
pub split_prefix: *const i8,
}Fields§
§flag: i64§seed: i32§sdust_thres: i32§max_qlen: i32§bw: i32§bw_long: i32§max_gap: i32§max_gap_ref: i32§max_frag_len: i32§max_chain_skip: i32§max_chain_iter: i32§min_cnt: i32§min_chain_score: i32§chain_gap_scale: f32§chain_skip_scale: f32§rmq_size_cap: i32§rmq_inner_dist: i32§rmq_rescue_size: i32§rmq_rescue_ratio: f32§mask_level: f32§mask_len: i32§pri_ratio: f32§best_n: i32§alt_drop: f32§a: i32§b: i32§q: i32§e: i32§q2: i32§e2: i32§transition: i32§sc_ambi: i32§noncan: i32§junc_bonus: i32§zdrop: i32§zdrop_inv: i32§end_bonus: i32§min_dp_max: i32§min_ksw_len: i32§anchor_ext_len: i32§anchor_ext_shift: i32§max_clip_ratio: f32§rank_min_len: i32§rank_frac: f32§pe_ori: i32§pe_bonus: i32§mid_occ_frac: f32§q_occ_frac: f32§min_mid_occ: i32§max_mid_occ: i32§mid_occ: i32§max_occ: i32§max_max_occ: i32§occ_dist: i32§mini_batch_size: i64§max_sw_mat: i64§cap_kalloc: i64§split_prefix: *const i8