Struct minimap2_sys::mm_mapopt_t

#[repr(C)]
pub struct mm_mapopt_t {

    pub flag: i64,
    pub seed: c_int,
    pub sdust_thres: c_int,
    pub max_qlen: c_int,
    pub bw: c_int,
    pub bw_long: c_int,
    pub max_gap: c_int,
    pub max_gap_ref: c_int,
    pub max_frag_len: c_int,
    pub max_chain_skip: c_int,
    pub max_chain_iter: c_int,
    pub min_cnt: c_int,
    pub min_chain_score: c_int,
    pub chain_gap_scale: f32,
    pub chain_skip_scale: f32,
    pub rmq_size_cap: c_int,
    pub rmq_inner_dist: c_int,
    pub rmq_rescue_size: c_int,
    pub rmq_rescue_ratio: f32,
    pub mask_level: f32,
    pub mask_len: c_int,
    pub pri_ratio: f32,
    pub best_n: c_int,
    pub alt_drop: f32,
    pub a: c_int,
    pub b: c_int,
    pub q: c_int,
    pub e: c_int,
    pub q2: c_int,
    pub e2: c_int,
    pub transition: c_int,
    pub sc_ambi: c_int,
    pub noncan: c_int,
    pub junc_bonus: c_int,
    pub zdrop: c_int,
    pub zdrop_inv: c_int,
    pub end_bonus: c_int,
    pub min_dp_max: c_int,
    pub min_ksw_len: c_int,
    pub anchor_ext_len: c_int,
    pub anchor_ext_shift: c_int,
    pub max_clip_ratio: f32,
    pub rank_min_len: c_int,
    pub rank_frac: f32,
    pub pe_ori: c_int,
    pub pe_bonus: c_int,
    pub mid_occ_frac: f32,
    pub q_occ_frac: f32,
    pub min_mid_occ: i32,
    pub max_mid_occ: i32,
    pub mid_occ: i32,
    pub max_occ: i32,
    pub max_max_occ: i32,
    pub occ_dist: i32,
    pub mini_batch_size: i64,
    pub max_sw_mat: i64,
    pub cap_kalloc: i64,
    pub split_prefix: *const c_char,
}

Fields

flag: i64

seed: c_int

sdust_thres: c_int

max_qlen: c_int

bw: c_int

bw_long: c_int

max_gap: c_int

max_gap_ref: c_int

max_frag_len: c_int

max_chain_skip: c_int

max_chain_iter: c_int

min_cnt: c_int

min_chain_score: c_int

chain_gap_scale: f32

chain_skip_scale: f32

rmq_size_cap: c_int

rmq_inner_dist: c_int

rmq_rescue_size: c_int

rmq_rescue_ratio: f32

mask_level: f32

mask_len: c_int

pri_ratio: f32

best_n: c_int

alt_drop: f32

a: c_int

b: c_int

q: c_int

e: c_int

q2: c_int

e2: c_int

transition: c_int

sc_ambi: c_int

noncan: c_int

junc_bonus: c_int

zdrop: c_int

zdrop_inv: c_int

end_bonus: c_int

min_dp_max: c_int

min_ksw_len: c_int

anchor_ext_len: c_int

anchor_ext_shift: c_int

max_clip_ratio: f32

rank_min_len: c_int

rank_frac: f32

pe_ori: c_int

pe_bonus: c_int

mid_occ_frac: f32

q_occ_frac: f32

min_mid_occ: i32

max_mid_occ: i32

mid_occ: i32

max_occ: i32

max_max_occ: i32

occ_dist: i32

mini_batch_size: i64

max_sw_mat: i64

cap_kalloc: i64

split_prefix: *const c_char

Trait Implementations

impl Clone for mm_mapopt_t

fn clone(&self) -> mm_mapopt_t

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for mm_mapopt_t

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for mm_mapopt_t

fn default() -> Self

Returns the “default value” for a type.

impl Copy for mm_mapopt_t