minimap2_paf_io/error/
mod.rs

1/// The result type of this crate using the error type of this crate.
2pub type Result<T> = std::result::Result<T, Error>;
3
4/// All errors that can occur while parsing.
5///
6/// Printing is error-free, except for IO errors.
7/// Therefore when printing, Rust's [std::io::Error] is used.
8#[derive(Debug)]
9pub enum Error {
10    /// An I/O error.
11    IOError(std::io::Error),
12
13    /// Parsing error when parsing the column into the expected type.
14    ColumnParseError,
15
16    /// The line was ended, but it was not expected (e.g. further columns are expected instead).
17    UnexpectedEndOfLine,
18
19    /// The file was ended, but it was not expected (e.g. further columns are expected instead).
20    UnexpectedEndOfFile,
21
22    /// An unexpected character was found.
23    UnexpectedCharacter,
24
25    /// An optional column with an unexpected name or type was found.
26    UnexpectedOptionalColumn {
27        /// The header of the column, or a part of it.
28        /// The header is the name and type.
29        column_header: String,
30    },
31
32    /// A cigar string could not be parsed.
33    MalformedCigar,
34
35    /// An alignment difference string could not be parsed.
36    MalformedAlignmentDifference,
37
38    /// Quick and dirty: simply use strings to report errors.
39    Message(String),
40}
41
42impl From<std::io::Error> for Error {
43    fn from(error: std::io::Error) -> Self {
44        Self::IOError(error)
45    }
46}
minimap2_paf_io/error/mod.rs

minimap2_paf_io/error/
mod.rs
