Crate mimic_etl 

mimic-etl

MIMIC-III/IV clinical database ETL — CSV to Apache Arrow.

Features

• medcodes - Integration with medical code ontologies
• cli - Command-line interface (future)

Usage

use mimic_etl::{csv_reader, arrow_writer};

License

Licensed under either of

• Apache License, Version 2.0 (LICENSE-APACHE or http://www.apache.org/licenses/LICENSE-2.0)
• MIT license (LICENSE-MIT or http://opensource.org/licenses/MIT)

at your option.

Contribution

Unless you explicitly state otherwise, any contribution intentionally submitted for inclusion in the work by you, as defined in the Apache-2.0 license, shall be dual licensed as above, without any additional terms or conditions. MIMIC-III/IV clinical database ETL — CSV to Apache Arrow.

This crate provides:

• Efficient CSV to Arrow conversion for MIMIC datasets
• Parallel processing using Rayon
• Memory-mapped file support for large datasets
• Support for core MIMIC-IV tables

Re-exports

pub use arrow_writer::StreamingArrowWriter;

pub use arrow_writer::to_arrow_ipc;

pub use arrow_writer::to_parquet;

pub use csv_reader::MimicCsvReader;

pub use types::ClinicalEvent;

pub use types::DatasetConfig;

pub use types::EtlError;

pub use types::Result;

Modules

arrow_writer

Arrow writing utilities for MIMIC datasets

csv_reader

CSV reading utilities for MIMIC datasets

types

Core types for MIMIC ETL operations.