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Source - BasePairProb
- Base-pair probability: position i pairs with position j with given probability.
- SequenceBpp
- Per-sequence base-pair probability table.
- compute_bpp_contrafold
- Compute base-pair probabilities for all sequences using CONTRAfold (X-INS-i).
- compute_bpp_mccaskill
- Compute base-pair probabilities for all sequences using McCaskill (Q-INS-i).
- find_tool
- Find an external tool in PATH or MAFFT_BINARIES directory.
- run_contrafold
- Run CONTRAfold structure prediction on a single sequence.
- run_dash
- Run DASH structural alignment client.
- run_mccaskill
- Run McCaskill base-pair probability prediction on a single sequence.