List of all items

Structs

• MafftEngine
• RefinementParams
• external::BasePairProb
• external::SequenceBpp
• progressive::MultipleAlignment
• progressive::StepTrace

Enums

• AlignmentMode
• adjust_direction::AdjustMode
• adjust_direction::Direction
• progressive::MergeOrAlign

Functions

• add_sequences
• add_sequences_keeplength
• add_sequences_keeplength_with_map
• adjust_direction::adjust_direction
• adjust_direction::adjust_direction_mode
• adjust_direction::adjust_direction_mode_add
• adjust_direction::reverse_complement
• dndpre_offset_shift
• external::compute_bpp_contrafold
• external::compute_bpp_mccaskill
• external::find_tool
• external::run_contrafold
• external::run_dash
• external::run_mccaskill
• iterative_refine
• pair_penalty_scales
• progressive::apply_c_insertnewgaps
• progressive::blend_profiles_exact
• progressive::findnewgaps
• progressive::merge_two_groups_progressive
• progressive::progressive_align
• progressive::progressive_align_full
• progressive::progressive_align_full_c_compat
• progressive::progressive_align_full_c_compat_ex
• progressive::progressive_align_partial
• progressive::progressive_align_unweighted
• progressive::progressive_align_with_constraints
• progressive::progressive_align_with_mergeoralign
• progressive::progressive_align_with_mergeoralign_n
• progressive::progressive_align_with_weights_override