Struct lt_fm_index::use_case::LtFmIndex

pub struct LtFmIndex<C: CountArray, B: Bwt> { /* fields omitted */ }

Implementations

impl<C: CountArray, B: Bwt> LtFmIndex<C, B>

pub fn new(text: Text, sa_sampling_ratio: u64, kmer_size: usize) -> Self

pub fn suffix_array_sampling_ratio(&self) -> u64

pub fn lookup_table_kmer_size(&self) -> usize

Trait Implementations

impl<C: Debug + CountArray, B: Debug + Bwt> Debug for LtFmIndex<C, B>

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de, C: CountArray, B: Bwt> Deserialize<'de> for LtFmIndex<C, B> where
    C: Deserialize<'de>,
    B: Deserialize<'de>, 

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error> where
    __D: Deserializer<'de>, 

Deserialize this value from the given Serde deserializer.

impl<C: CountArray, B: Bwt> FmIndex for LtFmIndex<C, B>

fn count(&self, pattern: Pattern<'_>) -> u64

Count the number of times the Pattern appears.

fn locate(&self, pattern: Pattern<'_>) -> Vec<u64>

Locate the start index in which the Pattern appears. The result vector is not sorted.

impl<C: PartialEq + CountArray, B: PartialEq + Bwt> PartialEq<LtFmIndex<C, B>> for LtFmIndex<C, B>

fn eq(&self, other: &LtFmIndex<C, B>) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &LtFmIndex<C, B>) -> bool

This method tests for !=.

impl<C: CountArray, B: Bwt> Serialize for LtFmIndex<C, B> where
    C: Serialize,
    B: Serialize, 

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error> where
    __S: Serializer, 

Serialize this value into the given Serde serializer.

impl<C: CountArray, B: Bwt> StructuralPartialEq for LtFmIndex<C, B>