List of all items

Structs

• leiden::clustering::SimpleClustering
• leiden::leiden::Leiden
• leiden::louvain::Louvain
• leiden::louvain_parallel::ParallelLouvain
• leiden::network::EdgeReferences
• leiden::network::NeighborAndWeightIter
• leiden::network::Network
• matrix::agreement::CellAgreement
• matrix::archetypal::AaArgs
• matrix::archetypal::AaResult
• matrix::archetypal::AnchorOpts
• matrix::archetypal::AnchorResult
• matrix::branching::Branching
• matrix::clustering::KmeansArgs
• matrix::common_io::ReadLinesOut
• matrix::dmatrix_io::CooMatrix
• matrix::dmatrix_io::CscMatrix
• matrix::dmatrix_io::CsrMatrix
• matrix::embedding_geometry::EmbeddingGeometry
• matrix::graph::AdjListGraph
• matrix::kmeans::KmeansRowsFit
• matrix::kmeans::KmeansRowsOpts
• matrix::knn::ColumnDict
• matrix::knn::SearchScratch
• matrix::knn::VecPoint
• matrix::knn::ivf::IvfArgs
• matrix::knn_graph::KnnGraph
• matrix::knn_graph::KnnGraphArgs
• matrix::layout::PhateArgs
• matrix::membership::GeneIndexResolver
• matrix::membership::LocusIndexResolver
• matrix::membership::MatchStats
• matrix::membership::Membership
• matrix::ndarray_stat::RunningStatistics
• matrix::pair_graph::FeaturePairGraph
• matrix::parquet::ParquetReader
• matrix::parquet::ParquetWriter
• matrix::principal_curve::LineageCurve
• matrix::principal_curve::PrincipalCurveArgs
• matrix::principal_curve::PrincipalCurves
• matrix::principal_graph::CellProjection
• matrix::principal_graph::PrincipalGraph
• matrix::principal_graph::PrincipalGraphArgs
• matrix::running_quantile::P2Quantile
• matrix::running_quantile::RunningQuantiles
• matrix::sparse_stat::SparseColumnRunningStatistics
• matrix::sparse_stat::SparseRunningStatistics
• matrix::table::TableReader
• matrix::traits::MatWithNames
• matrix::traits::NRowNColTriplets
• matrix::umap::Umap
• param::dmatrix_gamma::GammaMatrix
• param::ndarray_gamma::GammaMatrix

Enums

• matrix::common_io::Delimiter
• matrix::kmeans::KmeansMetric
• matrix::knn_graph::DistanceMerge
• matrix::knn_graph::EdgeSource
• matrix::knockoff::KnockoffS
• matrix::parquet::Column
• matrix::table::Delimiter
• matrix::table::TableRows
• param::traits::CalibrateTarget

Traits

• leiden::clustering::Clustering
• matrix::clustering::Kmeans
• matrix::common_io::PathOsToStr
• matrix::graph::WeightedGraph
• matrix::knn::ColumnDictOps
• matrix::knn::MakeVecPoint
• matrix::traits::AdjustByDivisionOp
• matrix::traits::CandleDataLoaderOps
• matrix::traits::CompositeOps
• matrix::traits::ConvertMatOps
• matrix::traits::DistanceOps
• matrix::traits::EncodingOps
• matrix::traits::FusedTensorOps
• matrix::traits::IoOps
• matrix::traits::MatElemOps
• matrix::traits::MatOps
• matrix::traits::MatTriplets
• matrix::traits::MeltOps
• matrix::traits::RandomizedAlgs
• matrix::traits::RunningStatOps
• matrix::traits::SampleOps
• matrix::traits::TfIdfOps
• param::io::ParamIo
• param::traits::Inference
• param::traits::TwoStatInference
• param::traits::TwoStatParam

Functions

• leiden::objective::cpm
• leiden::objective::par_cpm
• matrix::agreement::agreement_from_log_rate
• matrix::agreement::agreement_from_rate
• matrix::agreement::pearson_log1p
• matrix::agreement::rate_to_counts
• matrix::agreement::spearman
• matrix::archetypal::anchor_topics
• matrix::archetypal::archetypal_analysis
• matrix::archetypal::select_anchor_topics
• matrix::archetypal::select_archetype_k
• matrix::archetypal::simplex_lsq
• matrix::archetypal::topic_dictionary
• matrix::branching::max_branching
• matrix::clap_defaults::clap_defaults
• matrix::clustering::leiden_clustering
• matrix::common_io::basename
• matrix::common_io::create_temp_dir_file
• matrix::common_io::detect_header_row_numeric
• matrix::common_io::dir_base_ext
• matrix::common_io::dirname
• matrix::common_io::file_ext
• matrix::common_io::file_stem
• matrix::common_io::first_line_fields
• matrix::common_io::mkdir
• matrix::common_io::mkdir_parent
• matrix::common_io::open_buf_reader
• matrix::common_io::open_buf_writer
• matrix::common_io::read_lines
• matrix::common_io::read_lines_of_types
• matrix::common_io::read_lines_of_words
• matrix::common_io::read_lines_of_words_delim
• matrix::common_io::read_lines_of_words_generic
• matrix::common_io::read_name_list
• matrix::common_io::recursive_copy
• matrix::common_io::remove_all_files
• matrix::common_io::remove_file
• matrix::common_io::unquote_field
• matrix::common_io::unzip_dir
• matrix::common_io::write_lines
• matrix::common_io::write_types
• matrix::common_io::zip_dir
• matrix::common_io::zip_dir_as
• matrix::dense_mat_io::axis_id_names
• matrix::dense_mat_io::l2_normalize_rows_inplace
• matrix::dense_mat_io::read_mat
• matrix::dmatrix_rsvd::nystrom_basis
• matrix::dmatrix_util::adjust_by_poisson_ratio
• matrix::dmatrix_util::assign_columns
• matrix::dmatrix_util::build_columns_par
• matrix::dmatrix_util::concatenate_horizontal
• matrix::dmatrix_util::concatenate_vertical
• matrix::dmatrix_util::row_membership_matrix
• matrix::dmatrix_util::subset_columns
• matrix::dmatrix_util::subset_rows
• matrix::embedding_geometry::embedding_geometry
• matrix::graph::connected_components
• matrix::graph::num_connected_components
• matrix::graph::total_edge_weight
• matrix::graph::weighted_degrees
• matrix::hypothesis::benjamini_hochberg
• matrix::hypothesis::bootstrap_mean_ci
• matrix::hypothesis::mean
• matrix::hypothesis::sign_flip_pvalue
• matrix::kmeans::kmeans_centroids
• matrix::kmeans::kmeans_centroids_seeded
• matrix::kmeans::kmeans_rows_seeded
• matrix::kmeans::nearest_centroid_rows
• matrix::knn::all_pairs::knn_rows_l2
• matrix::knn::ivf::knn_rows_ivf
• matrix::knn::metric::l2_simd
• matrix::knn::metric::l2_sq
• matrix::knn_graph::compact_labels
• matrix::knn_graph::modularity_to_cpm_resolution
• matrix::knn_graph::run_leiden
• matrix::knn_graph::symmetric_adjacency
• matrix::knn_graph::tune_leiden_resolution
• matrix::knn_graph::umap_memberships
• matrix::knockoff::knockoff_s
• matrix::knockoff::knockoff_s_equicorrelated
• matrix::knockoff::knockoff_s_me
• matrix::knockoff::knockoff_s_mvr
• matrix::layout::phate_layout_2d
• matrix::layout::project_cells_nystrom
• matrix::layout::project_via_knn
• matrix::membership::canon_locus
• matrix::membership::detect_delimiter
• matrix::mtx_io::read_mtx_header
• matrix::mtx_io::read_mtx_triplets
• matrix::mtx_io::write_mtx_triplets
• matrix::pair_graph::test_graph_from_edges
• matrix::parquet::first_string_column
• matrix::parquet::parquet_add_bytearray
• matrix::parquet::parquet_add_numeric_column
• matrix::parquet::parquet_add_string_column
• matrix::parquet::parquet_numeric_column_count
• matrix::parquet::peek_parquet_field_names
• matrix::parquet::read_parquet_string_column
• matrix::parquet::read_parquet_string_columns_by_name
• matrix::parquet::read_table_columns
• matrix::parquet::write_named_table
• matrix::parquet::write_table
• matrix::pca::init_2d_from_scores
• matrix::pca::pc_layout_init
• matrix::pca::pc_scores
• matrix::pca::random_init_2d
• matrix::principal_curve::fit_principal_curves
• matrix::principal_graph::closest_node_to_row
• matrix::principal_graph::fit_principal_graph
• matrix::principal_graph::mst_from_sqdist
• matrix::principal_graph::node_geodesic_from
• matrix::principal_graph::pairwise_sqdist_rows_to_rows
• matrix::principal_graph::project_cells_to_graph
• matrix::principal_graph::pseudotime_from_root
• matrix::progress::new_progress_bar
• matrix::progress::new_spinner
• matrix::rand_util::collect_f32_seeded
• matrix::rand_util::collect_seeded
• matrix::rand_util::entropy_seed
• matrix::rand_util::mix_seed
• matrix::rand_util::name_seed
• matrix::rand_util::normal_f32_seeded
• matrix::sparse_stat::save_grouped_stats_parquet
• matrix::sparse_stat::save_grouped_stats_parquet_cols
• matrix::stop::par_reduce_replicates
• matrix::stop::par_replicates
• matrix::stop::setup_stop_handler
• matrix::stop::stop_flag
• matrix::stop::stopped
• matrix::table::field_to_string
• matrix::table::is_parquet_path
• matrix::utils::byte_budget_intervals
• matrix::utils::cosine
• matrix::utils::default_block_size
• matrix::utils::generate_minibatch_intervals
• matrix::utils::median
• matrix::utils::partition_by_membership
• matrix::utils::quantiles
• param::io::to_parquet

Type Aliases

• matrix::dense_mat_io::Mat
• matrix::dmatrix_io::DMatrix
• matrix::dmatrix_io::DVector
• matrix::parquet::TableColumns

Statics

• matrix::progress::MULTI_PROGRESS

Constants

• leiden::louvain::DEFAULT_RESOLUTION
• matrix::agreement::LOG_PROB_FLOOR
• matrix::agreement::PROB_FLOOR
• matrix::common_io::DATA_FILE_EXTENSIONS
• matrix::common_io::QUIET_LOG_FILTER
• matrix::common_io::VERBOSE_LOG_FILTER
• matrix::knn::ivf::DEFAULT_N_PROBE
• matrix::knn_graph::ALL_PAIRS_THRESHOLD
• matrix::pca::INIT_SCALE