lance_table/format/

manifest.rs

// SPDX-License-Identifier: Apache-2.0
// SPDX-FileCopyrightText: Copyright The Lance Authors

use async_trait::async_trait;
use chrono::prelude::*;
use deepsize::DeepSizeOf;
use lance_file::datatypes::{populate_schema_dictionary, Fields, FieldsWithMeta};
use lance_file::reader::FileReader;
use lance_file::version::{LanceFileVersion, LEGACY_FORMAT_VERSION};
use lance_io::traits::{ProtoStruct, Reader};
use object_store::path::Path;
use prost::Message;
use prost_types::Timestamp;
use std::collections::{BTreeMap, HashMap};
use std::ops::Range;
use std::sync::Arc;

use super::Fragment;
use crate::feature_flags::{has_deprecated_v2_feature_flag, FLAG_STABLE_ROW_IDS};
use crate::format::pb;
use lance_core::cache::LanceCache;
use lance_core::datatypes::{Schema, StorageClass};
use lance_core::{Error, Result};
use lance_io::object_store::{ObjectStore, ObjectStoreRegistry};
use lance_io::utils::read_struct;
use snafu::location;

/// Manifest of a dataset
///
///  * Schema
///  * Version
///  * Fragments.
///  * Indices.
#[derive(Debug, Clone, PartialEq, DeepSizeOf)]
pub struct Manifest {
    /// Dataset schema.
    pub schema: Schema,

    /// Local schema, only containing fields with the default storage class (not blobs)
    pub local_schema: Schema,

    /// Dataset version
    pub version: u64,

    /// Branch name, None if the dataset is the main branch.
    pub branch: Option<String>,

    /// Version of the writer library that wrote this manifest.
    pub writer_version: Option<WriterVersion>,

    /// Fragments, the pieces to build the dataset.
    ///
    /// This list is stored in order, sorted by fragment id.  However, the fragment id
    /// sequence may have gaps.
    pub fragments: Arc<Vec<Fragment>>,

    /// The file position of the version aux data.
    pub version_aux_data: usize,

    /// The file position of the index metadata.
    pub index_section: Option<usize>,

    /// The creation timestamp with nanosecond resolution as 128-bit integer
    pub timestamp_nanos: u128,

    /// An optional string tag for this version
    pub tag: Option<String>,

    /// The reader flags
    pub reader_feature_flags: u64,

    /// The writer flags
    pub writer_feature_flags: u64,

    /// The max fragment id used so far
    /// None means never set, Some(0) means max ID used so far is 0
    pub max_fragment_id: Option<u32>,

    /// The path to the transaction file, relative to the root of the dataset
    pub transaction_file: Option<String>,

    /// Precomputed logic offset of each fragment
    /// accelerating the fragment search using offset ranges.
    fragment_offsets: Vec<usize>,

    /// The max row id used so far.
    pub next_row_id: u64,

    /// The storage format of the data files.
    pub data_storage_format: DataStorageFormat,

    /// Table configuration.
    pub config: HashMap<String, String>,

    /// Table metadata.
    ///
    /// This is a key-value map that can be used to store arbitrary metadata
    /// associated with the table. This is different than configuration, which
    /// is used to tell libraries how to read, write, or manage the table.
    pub table_metadata: HashMap<String, String>,

    /// Blob dataset version
    pub blob_dataset_version: Option<u64>,

    /* external base paths */
    pub base_paths: HashMap<u32, BasePath>,
}

// We use the most significant bit to indicate that a transaction is detached
pub const DETACHED_VERSION_MASK: u64 = 0x8000_0000_0000_0000;

pub fn is_detached_version(version: u64) -> bool {
    version & DETACHED_VERSION_MASK != 0
}

fn compute_fragment_offsets(fragments: &[Fragment]) -> Vec<usize> {
    fragments
        .iter()
        .map(|f| f.num_rows().unwrap_or_default())
        .chain([0]) // Make the last offset to be the full-length of the dataset.
        .scan(0_usize, |offset, len| {
            let start = *offset;
            *offset += len;
            Some(start)
        })
        .collect()
}

#[derive(Default)]
pub struct ManifestSummary {
    pub total_fragments: u64,
    pub total_data_files: u64,
    pub total_files_size: u64,
    pub total_deletion_files: u64,
    pub total_data_file_rows: u64,
    pub total_deletion_file_rows: u64,
    pub total_rows: u64,
}

impl From<ManifestSummary> for BTreeMap<String, String> {
    fn from(summary: ManifestSummary) -> Self {
        let mut stats_map = Self::new();
        stats_map.insert(
            "total_fragments".to_string(),
            summary.total_fragments.to_string(),
        );
        stats_map.insert(
            "total_data_files".to_string(),
            summary.total_data_files.to_string(),
        );
        stats_map.insert(
            "total_files_size".to_string(),
            summary.total_files_size.to_string(),
        );
        stats_map.insert(
            "total_deletion_files".to_string(),
            summary.total_deletion_files.to_string(),
        );
        stats_map.insert(
            "total_data_file_rows".to_string(),
            summary.total_data_file_rows.to_string(),
        );
        stats_map.insert(
            "total_deletion_file_rows".to_string(),
            summary.total_deletion_file_rows.to_string(),
        );
        stats_map.insert("total_rows".to_string(), summary.total_rows.to_string());
        stats_map
    }
}

impl Manifest {
    pub fn new(
        schema: Schema,
        fragments: Arc<Vec<Fragment>>,
        data_storage_format: DataStorageFormat,
        blob_dataset_version: Option<u64>,
        base_paths: HashMap<u32, BasePath>,
    ) -> Self {
        let fragment_offsets = compute_fragment_offsets(&fragments);
        let local_schema = schema.retain_storage_class(StorageClass::Default);

        Self {
            schema,
            local_schema,
            version: 1,
            branch: None,
            writer_version: Some(WriterVersion::default()),
            fragments,
            version_aux_data: 0,
            index_section: None,
            timestamp_nanos: 0,
            tag: None,
            reader_feature_flags: 0,
            writer_feature_flags: 0,
            max_fragment_id: None,
            transaction_file: None,
            fragment_offsets,
            next_row_id: 0,
            data_storage_format,
            config: HashMap::new(),
            table_metadata: HashMap::new(),
            blob_dataset_version,
            base_paths,
        }
    }

    pub fn new_from_previous(
        previous: &Self,
        schema: Schema,
        fragments: Arc<Vec<Fragment>>,
        new_blob_version: Option<u64>,
    ) -> Self {
        let fragment_offsets = compute_fragment_offsets(&fragments);
        let local_schema = schema.retain_storage_class(StorageClass::Default);

        let blob_dataset_version = new_blob_version.or(previous.blob_dataset_version);

        Self {
            schema,
            local_schema,
            version: previous.version + 1,
            branch: previous.branch.clone(),
            writer_version: Some(WriterVersion::default()),
            fragments,
            version_aux_data: 0,
            index_section: None, // Caller should update index if they want to keep them.
            timestamp_nanos: 0,  // This will be set on commit
            tag: None,
            reader_feature_flags: 0, // These will be set on commit
            writer_feature_flags: 0, // These will be set on commit
            max_fragment_id: previous.max_fragment_id,
            transaction_file: None,
            fragment_offsets,
            next_row_id: previous.next_row_id,
            data_storage_format: previous.data_storage_format.clone(),
            config: previous.config.clone(),
            table_metadata: previous.table_metadata.clone(),
            blob_dataset_version,
            base_paths: previous.base_paths.clone(),
        }
    }

    /// Performs a shallow_clone of the manifest entirely in memory without:
    /// - Any persistent storage operations
    /// - Modifications to the original data
    /// - If the shallow clone is for branch, ref_name is the source branch
    pub fn shallow_clone(
        &self,
        ref_name: Option<String>,
        ref_path: String,
        ref_base_id: u32,
        branch_name: Option<String>,
        transaction_file: String,
    ) -> Self {
        let cloned_fragments = self
            .fragments
            .as_ref()
            .iter()
            .map(|fragment| {
                let mut cloned_fragment = fragment.clone();
                for file in &mut cloned_fragment.files {
                    if file.base_id.is_none() {
                        file.base_id = Some(ref_base_id);
                    }
                }

                if let Some(deletion) = &mut cloned_fragment.deletion_file {
                    if deletion.base_id.is_none() {
                        deletion.base_id = Some(ref_base_id);
                    }
                }
                cloned_fragment
            })
            .collect::<Vec<_>>();

        Self {
            schema: self.schema.clone(),
            local_schema: self.local_schema.clone(),
            version: self.version,
            branch: branch_name,
            writer_version: self.writer_version.clone(),
            fragments: Arc::new(cloned_fragments),
            version_aux_data: self.version_aux_data,
            index_section: None, // These will be set on commit
            timestamp_nanos: self.timestamp_nanos,
            tag: None,
            reader_feature_flags: 0, // These will be set on commit
            writer_feature_flags: 0, // These will be set on commit
            max_fragment_id: self.max_fragment_id,
            transaction_file: Some(transaction_file),
            fragment_offsets: self.fragment_offsets.clone(),
            next_row_id: self.next_row_id,
            data_storage_format: self.data_storage_format.clone(),
            config: self.config.clone(),
            blob_dataset_version: self.blob_dataset_version,
            base_paths: {
                let mut base_paths = self.base_paths.clone();
                let base_path = BasePath::new(ref_base_id, ref_path, ref_name, true);
                base_paths.insert(ref_base_id, base_path);
                base_paths
            },
            table_metadata: self.table_metadata.clone(),
        }
    }

    /// Return the `timestamp_nanos` value as a Utc DateTime
    pub fn timestamp(&self) -> DateTime<Utc> {
        let nanos = self.timestamp_nanos % 1_000_000_000;
        let seconds = ((self.timestamp_nanos - nanos) / 1_000_000_000) as i64;
        Utc.from_utc_datetime(
            &DateTime::from_timestamp(seconds, nanos as u32)
                .unwrap_or_default()
                .naive_utc(),
        )
    }

    /// Set the `timestamp_nanos` value from a Utc DateTime
    pub fn set_timestamp(&mut self, nanos: u128) {
        self.timestamp_nanos = nanos;
    }

    /// Get a mutable reference to the config
    pub fn config_mut(&mut self) -> &mut HashMap<String, String> {
        &mut self.config
    }

    /// Get a mutable reference to the table metadata
    pub fn table_metadata_mut(&mut self) -> &mut HashMap<String, String> {
        &mut self.table_metadata
    }

    /// Get a mutable reference to the schema metadata
    pub fn schema_metadata_mut(&mut self) -> &mut HashMap<String, String> {
        &mut self.schema.metadata
    }

    /// Get a mutable reference to the field metadata for a specific field id
    ///
    /// Returns None if the field does not exist in the schema.
    pub fn field_metadata_mut(&mut self, field_id: i32) -> Option<&mut HashMap<String, String>> {
        self.schema
            .field_by_id_mut(field_id)
            .map(|field| &mut field.metadata)
    }

    /// Set the `config` from an iterator
    #[deprecated(note = "Use config_mut() for direct access to config HashMap")]
    pub fn update_config(&mut self, upsert_values: impl IntoIterator<Item = (String, String)>) {
        self.config.extend(upsert_values);
    }

    /// Delete `config` keys using a slice of keys
    #[deprecated(note = "Use config_mut() for direct access to config HashMap")]
    pub fn delete_config_keys(&mut self, delete_keys: &[&str]) {
        self.config
            .retain(|key, _| !delete_keys.contains(&key.as_str()));
    }

    /// Replaces the schema metadata with the given key-value pairs.
    #[deprecated(note = "Use schema_metadata_mut() for direct access to schema metadata HashMap")]
    pub fn replace_schema_metadata(&mut self, new_metadata: HashMap<String, String>) {
        self.schema.metadata = new_metadata;
    }

    /// Replaces the metadata of the field with the given id with the given key-value pairs.
    ///
    /// If the field does not exist in the schema, this is a no-op.
    #[deprecated(
        note = "Use field_metadata_mut(field_id) for direct access to field metadata HashMap"
    )]
    pub fn replace_field_metadata(
        &mut self,
        field_id: i32,
        new_metadata: HashMap<String, String>,
    ) -> Result<()> {
        if let Some(field) = self.schema.field_by_id_mut(field_id) {
            field.metadata = new_metadata;
            Ok(())
        } else {
            Err(Error::invalid_input(
                format!(
                    "Field with id {} does not exist for replace_field_metadata",
                    field_id
                ),
                location!(),
            ))
        }
    }

    /// Check the current fragment list and update the high water mark
    pub fn update_max_fragment_id(&mut self) {
        // If there are no fragments, don't update max_fragment_id
        if self.fragments.is_empty() {
            return;
        }

        let max_fragment_id = self
            .fragments
            .iter()
            .map(|f| f.id)
            .max()
            .unwrap() // Safe because we checked fragments is not empty
            .try_into()
            .unwrap();

        match self.max_fragment_id {
            None => {
                // First time being set
                self.max_fragment_id = Some(max_fragment_id);
            }
            Some(current_max) => {
                // Only update if the computed max is greater than current
                // This preserves the high water mark even when fragments are deleted
                if max_fragment_id > current_max {
                    self.max_fragment_id = Some(max_fragment_id);
                }
            }
        }
    }

    /// Return the max fragment id.
    /// Note this does not support recycling of fragment ids.
    ///
    /// This will return None if there are no fragments and max_fragment_id was never set.
    pub fn max_fragment_id(&self) -> Option<u64> {
        if let Some(max_id) = self.max_fragment_id {
            // Return the stored high water mark
            Some(max_id.into())
        } else {
            // Not yet set, compute from fragment list
            self.fragments.iter().map(|f| f.id).max()
        }
    }

    /// Get the max used field id
    ///
    /// This is different than [Schema::max_field_id] because it also considers
    /// the field ids in the data files that have been dropped from the schema.
    pub fn max_field_id(&self) -> i32 {
        let schema_max_id = self.schema.max_field_id().unwrap_or(-1);
        let fragment_max_id = self
            .fragments
            .iter()
            .flat_map(|f| f.files.iter().flat_map(|file| file.fields.as_slice()))
            .max()
            .copied();
        let fragment_max_id = fragment_max_id.unwrap_or(-1);
        schema_max_id.max(fragment_max_id)
    }

    /// Return the fragments that are newer than the given manifest.
    /// Note this does not support recycling of fragment ids.
    pub fn fragments_since(&self, since: &Self) -> Result<Vec<Fragment>> {
        if since.version >= self.version {
            return Err(Error::io(
                format!(
                    "fragments_since: given version {} is newer than manifest version {}",
                    since.version, self.version
                ),
                location!(),
            ));
        }
        let start = since.max_fragment_id();
        Ok(self
            .fragments
            .iter()
            .filter(|&f| start.map(|s| f.id > s).unwrap_or(true))
            .cloned()
            .collect())
    }

    /// Find the fragments that contain the rows, identified by the offset range.
    ///
    /// Note that the offsets are the logical offsets of rows, not row IDs.
    ///
    ///
    /// Parameters
    /// ----------
    /// range: Range<usize>
    ///     Offset range
    ///
    /// Returns
    /// -------
    /// Vec<(usize, Fragment)>
    ///    A vector of `(starting_offset_of_fragment, fragment)` pairs.
    ///
    pub fn fragments_by_offset_range(&self, range: Range<usize>) -> Vec<(usize, &Fragment)> {
        let start = range.start;
        let end = range.end;
        let idx = self
            .fragment_offsets
            .binary_search(&start)
            .unwrap_or_else(|idx| idx - 1);

        let mut fragments = vec![];
        for i in idx..self.fragments.len() {
            if self.fragment_offsets[i] >= end
                || self.fragment_offsets[i] + self.fragments[i].num_rows().unwrap_or_default()
                    <= start
            {
                break;
            }
            fragments.push((self.fragment_offsets[i], &self.fragments[i]));
        }

        fragments
    }

    /// Whether the dataset uses stable row ids.
    pub fn uses_stable_row_ids(&self) -> bool {
        self.reader_feature_flags & FLAG_STABLE_ROW_IDS != 0
    }

    /// Creates a serialized copy of the manifest, suitable for IPC or temp storage
    /// and can be used to create a dataset
    pub fn serialized(&self) -> Vec<u8> {
        let pb_manifest: pb::Manifest = self.into();
        pb_manifest.encode_to_vec()
    }

    pub fn should_use_legacy_format(&self) -> bool {
        self.data_storage_format.version == LEGACY_FORMAT_VERSION
    }

    /// Get the summary information of a manifest.
    ///
    /// This function calculates various statistics about the manifest, including:
    /// - total_files_size: Total size of all data files in bytes
    /// - total_fragments: Total number of fragments in the dataset
    /// - total_data_files: Total number of data files across all fragments
    /// - total_deletion_files: Total number of deletion files
    /// - total_data_file_rows: Total number of rows in data files
    /// - total_deletion_file_rows: Total number of deleted rows in deletion files
    /// - total_rows: Total number of rows in the dataset
    pub fn summary(&self) -> ManifestSummary {
        // Calculate total fragments
        let mut summary =
            self.fragments
                .iter()
                .fold(ManifestSummary::default(), |mut summary, f| {
                    // Count data files in the current fragment
                    summary.total_data_files += f.files.len() as u64;
                    // Sum the number of rows for the current fragment (if available)
                    if let Some(num_rows) = f.num_rows() {
                        summary.total_rows += num_rows as u64;
                    }
                    // Sum file sizes for all data files in the current fragment (if available)
                    for data_file in &f.files {
                        if let Some(size_bytes) = data_file.file_size_bytes.get() {
                            summary.total_files_size += size_bytes.get();
                        }
                    }
                    // Check and count if the current fragment has a deletion file
                    if f.deletion_file.is_some() {
                        summary.total_deletion_files += 1;
                    }
                    // Sum the number of deleted rows from the deletion file (if available)
                    if let Some(deletion_file) = &f.deletion_file {
                        if let Some(num_deleted) = deletion_file.num_deleted_rows {
                            summary.total_deletion_file_rows += num_deleted as u64;
                        }
                    }
                    summary
                });
        summary.total_fragments = self.fragments.len() as u64;
        summary.total_data_file_rows = summary.total_rows + summary.total_deletion_file_rows;

        summary
    }
}

#[derive(Debug, Clone, PartialEq)]
pub struct BasePath {
    pub id: u32,
    pub name: Option<String>,
    pub is_dataset_root: bool,
    /// The full URI string (e.g., "s3://bucket/path")
    pub path: String,
}

impl BasePath {
    /// Create a new BasePath
    ///
    /// # Arguments
    ///
    /// * `id` - Unique identifier for this base path
    /// * `path` - Full URI string (e.g., "s3://bucket/path", "/local/path")
    /// * `name` - Optional human-readable name for this base
    /// * `is_dataset_root` - Whether this is the dataset root or a data-only base
    pub fn new(id: u32, path: String, name: Option<String>, is_dataset_root: bool) -> Self {
        Self {
            id,
            name,
            is_dataset_root,
            path,
        }
    }

    /// Extract the object store path from this BasePath's URI.
    ///
    /// This is a synchronous operation that parses the URI without initializing an object store.
    pub fn extract_path(&self, registry: Arc<ObjectStoreRegistry>) -> Result<Path> {
        ObjectStore::extract_path_from_uri(registry, &self.path)
    }
}

impl DeepSizeOf for BasePath {
    fn deep_size_of_children(&self, context: &mut deepsize::Context) -> usize {
        self.name.deep_size_of_children(context)
            + self.path.deep_size_of_children(context) * 2
            + size_of::<bool>()
    }
}

#[derive(Debug, Clone, PartialEq, DeepSizeOf)]
pub struct WriterVersion {
    pub library: String,
    pub version: String,
}

#[derive(Debug, Clone, PartialEq, DeepSizeOf)]
pub struct DataStorageFormat {
    pub file_format: String,
    pub version: String,
}

const LANCE_FORMAT_NAME: &str = "lance";

impl DataStorageFormat {
    pub fn new(version: LanceFileVersion) -> Self {
        Self {
            file_format: LANCE_FORMAT_NAME.to_string(),
            version: version.resolve().to_string(),
        }
    }

    pub fn lance_file_version(&self) -> Result<LanceFileVersion> {
        self.version.parse::<LanceFileVersion>()
    }
}

impl Default for DataStorageFormat {
    fn default() -> Self {
        Self::new(LanceFileVersion::default())
    }
}

impl From<pb::manifest::DataStorageFormat> for DataStorageFormat {
    fn from(pb: pb::manifest::DataStorageFormat) -> Self {
        Self {
            file_format: pb.file_format,
            version: pb.version,
        }
    }
}

#[derive(Debug, Clone, Copy, PartialEq, Eq)]
pub enum VersionPart {
    Major,
    Minor,
    Patch,
}

impl WriterVersion {
    /// Try to parse the version string as a semver string. Returns None if
    /// not successful.
    pub fn semver(&self) -> Option<(u32, u32, u32, Option<&str>)> {
        // First split by '-' to separate the version from the pre-release tag
        let (version_part, tag) = if let Some(dash_idx) = self.version.find('-') {
            (
                &self.version[..dash_idx],
                Some(&self.version[dash_idx + 1..]),
            )
        } else {
            (self.version.as_str(), None)
        };

        let mut parts = version_part.split('.');
        let major = parts.next().unwrap_or("0").parse().ok()?;
        let minor = parts.next().unwrap_or("0").parse().ok()?;
        let patch = parts.next().unwrap_or("0").parse().ok()?;

        Some((major, minor, patch, tag))
    }

    pub fn semver_or_panic(&self) -> (u32, u32, u32, Option<&str>) {
        self.semver()
            .unwrap_or_else(|| panic!("Invalid writer version: {}", self.version))
    }

    /// Return true if self is older than the given major/minor/patch
    pub fn older_than(&self, major: u32, minor: u32, patch: u32) -> bool {
        let version = self.semver_or_panic();
        (version.0, version.1, version.2) < (major, minor, patch)
    }

    pub fn bump(&self, part: VersionPart, keep_tag: bool) -> Self {
        let parts = self.semver_or_panic();
        let tag = if keep_tag { parts.3 } else { None };
        let new_parts = match part {
            VersionPart::Major => (parts.0 + 1, parts.1, parts.2, tag),
            VersionPart::Minor => (parts.0, parts.1 + 1, parts.2, tag),
            VersionPart::Patch => (parts.0, parts.1, parts.2 + 1, tag),
        };
        let new_version = if let Some(tag) = tag {
            format!("{}.{}.{}-{}", new_parts.0, new_parts.1, new_parts.2, tag)
        } else {
            format!("{}.{}.{}", new_parts.0, new_parts.1, new_parts.2)
        };
        Self {
            library: self.library.clone(),
            version: new_version,
        }
    }
}

impl Default for WriterVersion {
    #[cfg(not(test))]
    fn default() -> Self {
        Self {
            library: "lance".to_string(),
            version: env!("CARGO_PKG_VERSION").to_string(),
        }
    }

    // Unit tests always run as if they are in the next version.
    #[cfg(test)]
    fn default() -> Self {
        Self {
            library: "lance".to_string(),
            version: env!("CARGO_PKG_VERSION").to_string(),
        }
        .bump(VersionPart::Patch, true)
    }
}

impl ProtoStruct for Manifest {
    type Proto = pb::Manifest;
}

impl From<pb::BasePath> for BasePath {
    fn from(p: pb::BasePath) -> Self {
        Self::new(p.id, p.path, p.name, p.is_dataset_root)
    }
}

impl From<BasePath> for pb::BasePath {
    fn from(p: BasePath) -> Self {
        Self {
            id: p.id,
            name: p.name,
            is_dataset_root: p.is_dataset_root,
            path: p.path,
        }
    }
}

impl TryFrom<pb::Manifest> for Manifest {
    type Error = Error;

    fn try_from(p: pb::Manifest) -> Result<Self> {
        let timestamp_nanos = p.timestamp.map(|ts| {
            let sec = ts.seconds as u128 * 1e9 as u128;
            let nanos = ts.nanos as u128;
            sec + nanos
        });
        // We only use the writer version if it is fully set.
        let writer_version = match p.writer_version {
            Some(pb::manifest::WriterVersion { library, version }) => {
                Some(WriterVersion { library, version })
            }
            _ => None,
        };
        let fragments = Arc::new(
            p.fragments
                .into_iter()
                .map(Fragment::try_from)
                .collect::<Result<Vec<_>>>()?,
        );
        let fragment_offsets = compute_fragment_offsets(fragments.as_slice());
        let fields_with_meta = FieldsWithMeta {
            fields: Fields(p.fields),
            metadata: p.schema_metadata,
        };

        if FLAG_STABLE_ROW_IDS & p.reader_feature_flags != 0
            && !fragments.iter().all(|frag| frag.row_id_meta.is_some())
        {
            return Err(Error::Internal {
                message: "All fragments must have row ids".into(),
                location: location!(),
            });
        }

        let data_storage_format = match p.data_format {
            None => {
                if let Some(inferred_version) = Fragment::try_infer_version(fragments.as_ref())? {
                    // If there are fragments, they are a better indicator
                    DataStorageFormat::new(inferred_version)
                } else {
                    // No fragments to inspect, best we can do is look at writer flags
                    if has_deprecated_v2_feature_flag(p.writer_feature_flags) {
                        DataStorageFormat::new(LanceFileVersion::Stable)
                    } else {
                        DataStorageFormat::new(LanceFileVersion::Legacy)
                    }
                }
            }
            Some(format) => DataStorageFormat::from(format),
        };

        let schema = Schema::from(fields_with_meta);
        let local_schema = schema.retain_storage_class(StorageClass::Default);

        Ok(Self {
            schema,
            local_schema,
            version: p.version,
            branch: p.branch,
            writer_version,
            version_aux_data: p.version_aux_data as usize,
            index_section: p.index_section.map(|i| i as usize),
            timestamp_nanos: timestamp_nanos.unwrap_or(0),
            tag: if p.tag.is_empty() { None } else { Some(p.tag) },
            reader_feature_flags: p.reader_feature_flags,
            writer_feature_flags: p.writer_feature_flags,
            max_fragment_id: p.max_fragment_id,
            fragments,
            transaction_file: if p.transaction_file.is_empty() {
                None
            } else {
                Some(p.transaction_file)
            },
            fragment_offsets,
            next_row_id: p.next_row_id,
            data_storage_format,
            config: p.config,
            table_metadata: p.table_metadata,
            blob_dataset_version: if p.blob_dataset_version == 0 {
                None
            } else {
                Some(p.blob_dataset_version)
            },
            base_paths: p
                .base_paths
                .iter()
                .map(|item| (item.id, item.clone().into()))
                .collect(),
        })
    }
}

impl From<&Manifest> for pb::Manifest {
    fn from(m: &Manifest) -> Self {
        let timestamp_nanos = if m.timestamp_nanos == 0 {
            None
        } else {
            let nanos = m.timestamp_nanos % 1e9 as u128;
            let seconds = ((m.timestamp_nanos - nanos) / 1e9 as u128) as i64;
            Some(Timestamp {
                seconds,
                nanos: nanos as i32,
            })
        };
        let fields_with_meta: FieldsWithMeta = (&m.schema).into();
        Self {
            fields: fields_with_meta.fields.0,
            schema_metadata: m
                .schema
                .metadata
                .iter()
                .map(|(k, v)| (k.clone(), v.as_bytes().to_vec()))
                .collect(),
            version: m.version,
            branch: m.branch.clone(),
            writer_version: m
                .writer_version
                .as_ref()
                .map(|wv| pb::manifest::WriterVersion {
                    library: wv.library.clone(),
                    version: wv.version.clone(),
                }),
            fragments: m.fragments.iter().map(pb::DataFragment::from).collect(),
            table_metadata: m.table_metadata.clone(),
            version_aux_data: m.version_aux_data as u64,
            index_section: m.index_section.map(|i| i as u64),
            timestamp: timestamp_nanos,
            tag: m.tag.clone().unwrap_or_default(),
            reader_feature_flags: m.reader_feature_flags,
            writer_feature_flags: m.writer_feature_flags,
            max_fragment_id: m.max_fragment_id,
            transaction_file: m.transaction_file.clone().unwrap_or_default(),
            next_row_id: m.next_row_id,
            data_format: Some(pb::manifest::DataStorageFormat {
                file_format: m.data_storage_format.file_format.clone(),
                version: m.data_storage_format.version.clone(),
            }),
            config: m.config.clone(),
            blob_dataset_version: m.blob_dataset_version.unwrap_or_default(),
            base_paths: m
                .base_paths
                .values()
                .map(|base_path| pb::BasePath {
                    id: base_path.id,
                    name: base_path.name.clone(),
                    is_dataset_root: base_path.is_dataset_root,
                    path: base_path.path.clone(),
                })
                .collect(),
        }
    }
}

#[async_trait]
pub trait SelfDescribingFileReader {
    /// Open a file reader without any cached schema
    ///
    /// In this case the schema will first need to be loaded
    /// from the file itself.
    ///
    /// When loading files from a dataset it is preferable to use
    /// the fragment reader to avoid this overhead.
    async fn try_new_self_described(
        object_store: &ObjectStore,
        path: &Path,
        cache: Option<&LanceCache>,
    ) -> Result<Self>
    where
        Self: Sized,
    {
        let reader = object_store.open(path).await?;
        Self::try_new_self_described_from_reader(reader.into(), cache).await
    }

    async fn try_new_self_described_from_reader(
        reader: Arc<dyn Reader>,
        cache: Option<&LanceCache>,
    ) -> Result<Self>
    where
        Self: Sized;
}

#[async_trait]
impl SelfDescribingFileReader for FileReader {
    async fn try_new_self_described_from_reader(
        reader: Arc<dyn Reader>,
        cache: Option<&LanceCache>,
    ) -> Result<Self> {
        let metadata = Self::read_metadata(reader.as_ref(), cache).await?;
        let manifest_position = metadata.manifest_position.ok_or(Error::Internal {
            message: format!(
                "Attempt to open file at {} as self-describing but it did not contain a manifest",
                reader.path(),
            ),
            location: location!(),
        })?;
        let mut manifest: Manifest = read_struct(reader.as_ref(), manifest_position).await?;
        if manifest.should_use_legacy_format() {
            populate_schema_dictionary(&mut manifest.schema, reader.as_ref()).await?;
        }
        let schema = manifest.schema;
        let max_field_id = schema.max_field_id().unwrap_or_default();
        Self::try_new_from_reader(
            reader.path(),
            reader.clone(),
            Some(metadata),
            schema,
            0,
            0,
            max_field_id,
            cache,
        )
        .await
    }
}

#[cfg(test)]
mod tests {
    use crate::format::{DataFile, DeletionFile, DeletionFileType};
    use std::num::NonZero;

    use super::*;

    use arrow_schema::{Field as ArrowField, Schema as ArrowSchema};
    use lance_core::datatypes::Field;

    #[test]
    fn test_writer_version() {
        let wv = WriterVersion::default();
        assert_eq!(wv.library, "lance");
        let parts = wv.semver().unwrap();

        // Parse the actual cargo version to check if it has a pre-release tag
        let cargo_version = env!("CARGO_PKG_VERSION");
        let expected_tag = if cargo_version.contains('-') {
            Some(cargo_version.split('-').nth(1).unwrap())
        } else {
            None
        };

        assert_eq!(
            parts,
            (
                env!("CARGO_PKG_VERSION_MAJOR").parse().unwrap(),
                env!("CARGO_PKG_VERSION_MINOR").parse().unwrap(),
                // Unit tests run against (major,minor,patch + 1)
                env!("CARGO_PKG_VERSION_PATCH").parse::<u32>().unwrap() + 1,
                expected_tag
            )
        );

        // Verify the base version (without tag) matches CARGO_PKG_VERSION
        let base_version = cargo_version.split('-').next().unwrap();
        assert_eq!(
            format!("{}.{}.{}", parts.0, parts.1, parts.2 - 1),
            base_version
        );

        for part in &[VersionPart::Major, VersionPart::Minor, VersionPart::Patch] {
            let bumped = wv.bump(*part, false);
            let bumped_parts = bumped.semver_or_panic();
            assert!(wv.older_than(bumped_parts.0, bumped_parts.1, bumped_parts.2));
        }
    }

    #[test]
    fn test_fragments_by_offset_range() {
        let arrow_schema = ArrowSchema::new(vec![ArrowField::new(
            "a",
            arrow_schema::DataType::Int64,
            false,
        )]);
        let schema = Schema::try_from(&arrow_schema).unwrap();
        let fragments = vec![
            Fragment::with_file_legacy(0, "path1", &schema, Some(10)),
            Fragment::with_file_legacy(1, "path2", &schema, Some(15)),
            Fragment::with_file_legacy(2, "path3", &schema, Some(20)),
        ];
        let manifest = Manifest::new(
            schema,
            Arc::new(fragments),
            DataStorageFormat::default(),
            /*blob_dataset_version= */ None,
            HashMap::new(),
        );

        let actual = manifest.fragments_by_offset_range(0..10);
        assert_eq!(actual.len(), 1);
        assert_eq!(actual[0].0, 0);
        assert_eq!(actual[0].1.id, 0);

        let actual = manifest.fragments_by_offset_range(5..15);
        assert_eq!(actual.len(), 2);
        assert_eq!(actual[0].0, 0);
        assert_eq!(actual[0].1.id, 0);
        assert_eq!(actual[1].0, 10);
        assert_eq!(actual[1].1.id, 1);

        let actual = manifest.fragments_by_offset_range(15..50);
        assert_eq!(actual.len(), 2);
        assert_eq!(actual[0].0, 10);
        assert_eq!(actual[0].1.id, 1);
        assert_eq!(actual[1].0, 25);
        assert_eq!(actual[1].1.id, 2);

        // Out of range
        let actual = manifest.fragments_by_offset_range(45..100);
        assert!(actual.is_empty());

        assert!(manifest.fragments_by_offset_range(200..400).is_empty());
    }

    #[test]
    fn test_max_field_id() {
        // Validate that max field id handles varying field ids by fragment.
        let mut field0 =
            Field::try_from(ArrowField::new("a", arrow_schema::DataType::Int64, false)).unwrap();
        field0.set_id(-1, &mut 0);
        let mut field2 =
            Field::try_from(ArrowField::new("b", arrow_schema::DataType::Int64, false)).unwrap();
        field2.set_id(-1, &mut 2);

        let schema = Schema {
            fields: vec![field0, field2],
            metadata: Default::default(),
        };
        let fragments = vec![
            Fragment {
                id: 0,
                files: vec![DataFile::new_legacy_from_fields(
                    "path1",
                    vec![0, 1, 2],
                    None,
                )],
                deletion_file: None,
                row_id_meta: None,
                physical_rows: None,
                created_at_version_meta: None,
                last_updated_at_version_meta: None,
            },
            Fragment {
                id: 1,
                files: vec![
                    DataFile::new_legacy_from_fields("path2", vec![0, 1, 43], None),
                    DataFile::new_legacy_from_fields("path3", vec![2], None),
                ],
                deletion_file: None,
                row_id_meta: None,
                physical_rows: None,
                created_at_version_meta: None,
                last_updated_at_version_meta: None,
            },
        ];

        let manifest = Manifest::new(
            schema,
            Arc::new(fragments),
            DataStorageFormat::default(),
            /*blob_dataset_version= */ None,
            HashMap::new(),
        );

        assert_eq!(manifest.max_field_id(), 43);
    }

    #[test]
    fn test_config() {
        let arrow_schema = ArrowSchema::new(vec![ArrowField::new(
            "a",
            arrow_schema::DataType::Int64,
            false,
        )]);
        let schema = Schema::try_from(&arrow_schema).unwrap();
        let fragments = vec![
            Fragment::with_file_legacy(0, "path1", &schema, Some(10)),
            Fragment::with_file_legacy(1, "path2", &schema, Some(15)),
            Fragment::with_file_legacy(2, "path3", &schema, Some(20)),
        ];
        let mut manifest = Manifest::new(
            schema,
            Arc::new(fragments),
            DataStorageFormat::default(),
            /*blob_dataset_version= */ None,
            HashMap::new(),
        );

        let mut config = manifest.config.clone();
        config.insert("lance.test".to_string(), "value".to_string());
        config.insert("other-key".to_string(), "other-value".to_string());

        manifest.config_mut().extend(config.clone());
        assert_eq!(manifest.config, config.clone());

        config.remove("other-key");
        manifest.config_mut().remove("other-key");
        assert_eq!(manifest.config, config);
    }

    #[test]
    fn test_manifest_summary() {
        // Step 1: test empty manifest summary
        let arrow_schema = ArrowSchema::new(vec![
            ArrowField::new("id", arrow_schema::DataType::Int64, false),
            ArrowField::new("name", arrow_schema::DataType::Utf8, true),
        ]);
        let schema = Schema::try_from(&arrow_schema).unwrap();

        let empty_manifest = Manifest::new(
            schema.clone(),
            Arc::new(vec![]),
            DataStorageFormat::default(),
            None,
            HashMap::new(),
        );

        let empty_summary = empty_manifest.summary();
        assert_eq!(empty_summary.total_rows, 0);
        assert_eq!(empty_summary.total_files_size, 0);
        assert_eq!(empty_summary.total_fragments, 0);
        assert_eq!(empty_summary.total_data_files, 0);
        assert_eq!(empty_summary.total_deletion_file_rows, 0);
        assert_eq!(empty_summary.total_data_file_rows, 0);
        assert_eq!(empty_summary.total_deletion_files, 0);

        // Step 2: write empty files and verify summary
        let empty_fragments = vec![
            Fragment::with_file_legacy(0, "empty_file1.lance", &schema, Some(0)),
            Fragment::with_file_legacy(1, "empty_file2.lance", &schema, Some(0)),
        ];

        let empty_files_manifest = Manifest::new(
            schema.clone(),
            Arc::new(empty_fragments),
            DataStorageFormat::default(),
            None,
            HashMap::new(),
        );

        let empty_files_summary = empty_files_manifest.summary();
        assert_eq!(empty_files_summary.total_rows, 0);
        assert_eq!(empty_files_summary.total_files_size, 0);
        assert_eq!(empty_files_summary.total_fragments, 2);
        assert_eq!(empty_files_summary.total_data_files, 2);
        assert_eq!(empty_files_summary.total_deletion_file_rows, 0);
        assert_eq!(empty_files_summary.total_data_file_rows, 0);
        assert_eq!(empty_files_summary.total_deletion_files, 0);

        // Step 3: write real data and verify summary
        let real_fragments = vec![
            Fragment::with_file_legacy(0, "data_file1.lance", &schema, Some(100)),
            Fragment::with_file_legacy(1, "data_file2.lance", &schema, Some(250)),
            Fragment::with_file_legacy(2, "data_file3.lance", &schema, Some(75)),
        ];

        let real_data_manifest = Manifest::new(
            schema.clone(),
            Arc::new(real_fragments),
            DataStorageFormat::default(),
            None,
            HashMap::new(),
        );

        let real_data_summary = real_data_manifest.summary();
        assert_eq!(real_data_summary.total_rows, 425); // 100 + 250 + 75
        assert_eq!(real_data_summary.total_files_size, 0); // Zero for unknown
        assert_eq!(real_data_summary.total_fragments, 3);
        assert_eq!(real_data_summary.total_data_files, 3);
        assert_eq!(real_data_summary.total_deletion_file_rows, 0);
        assert_eq!(real_data_summary.total_data_file_rows, 425);
        assert_eq!(real_data_summary.total_deletion_files, 0);

        let file_version = LanceFileVersion::default();
        // Step 4: write deletion files and verify summary
        let mut fragment_with_deletion = Fragment::new(0)
            .with_file(
                "data_with_deletion.lance",
                vec![0, 1],
                vec![0, 1],
                &file_version,
                NonZero::new(1000),
            )
            .with_physical_rows(50);
        fragment_with_deletion.deletion_file = Some(DeletionFile {
            read_version: 123,
            id: 456,
            file_type: DeletionFileType::Array,
            num_deleted_rows: Some(10),
            base_id: None,
        });

        let manifest_with_deletion = Manifest::new(
            schema,
            Arc::new(vec![fragment_with_deletion]),
            DataStorageFormat::default(),
            None,
            HashMap::new(),
        );

        let deletion_summary = manifest_with_deletion.summary();
        assert_eq!(deletion_summary.total_rows, 40); // 50 - 10
        assert_eq!(deletion_summary.total_files_size, 1000);
        assert_eq!(deletion_summary.total_fragments, 1);
        assert_eq!(deletion_summary.total_data_files, 1);
        assert_eq!(deletion_summary.total_deletion_file_rows, 10);
        assert_eq!(deletion_summary.total_data_file_rows, 50);
        assert_eq!(deletion_summary.total_deletion_files, 1);

        //Just verify the transformation is OK
        let stats_map: BTreeMap<String, String> = deletion_summary.into();
        assert_eq!(stats_map.len(), 7)
    }
}