Re-exports§
pub use crate::pipeline::run;
Modules§
- adapters
- Adapters layer that bridges external compatibility crates into the internal pipeline.
- cli
- config
- console
- io
- kmer
- pipeline
- Pipeline: read input, run strict clustering, write outputs. Defaults (without –mw) are tuned to closely match CD-HIT at the same -c/-n.
- profiling
- Lightweight in-process profiler with near-zero overhead when disabled. Enable via env var: KIRA_CDH_PROFILE=1
- util
- validate