Crate jivanu 

Jivanu — Microbiology Engine

जीवाणु (Hindi: microbe, bacterium)

A Rust library for computational microbiology: growth kinetics, metabolism, genetics, epidemiology, biofilm, and antibiotic resistance.

Modules

• growth — Exponential/logistic growth, Monod kinetics, doubling time
• metabolism — Michaelis-Menten, ATP yields, enzyme inhibition
• genetics — Mutation rates, Hardy-Weinberg, GC content, codon table
• epidemiology — SIR/SEIR models, R0, herd immunity
• biofilm — Formation stages, quorum sensing, diffusion
• resistance — Kill curves, MIC, resistance transfer, drug combinations
• pharmacokinetics — Drug concentration models, PK parameters, AUC
• taxonomy — Domain, Gram stain, morphology, oxygen requirements

Example

use jivanu::growth;

// Monod kinetics: growth rate at half-saturation
let mu = growth::monod_kinetics(1.0, 0.5, 1.0).unwrap();
assert!((mu - 0.25).abs() < 1e-10); // mu_max/2 at S=K_s

// Doubling time
let td = growth::doubling_time(0.693).unwrap();
assert!((td - 1.0).abs() < 0.01); // ~1 hour

Re-exports

pub use error::JivanuError;

Modules

biofilm

Biofilm — formation stages, quorum sensing, nutrient diffusion.

bridge

Cross-module bridges — composing models from different domains.

epidemiology

Epidemiology — SIR/SEIR models, R0, herd immunity.

error

Error types for the jivanu microbiology engine.

genetics

Microbial genetics — mutation rates, Hardy-Weinberg, GC content, gene transfer.

growth

Microbial growth — exponential, logistic, Monod kinetics.

metabolism

Metabolism — enzyme kinetics, metabolic pathways, ATP yields.

pharmacokinetics

Pharmacokinetics — drug absorption, distribution, and elimination.

resistance

Antibiotic resistance — MIC, kill curves, resistance transfer.

stochastic

Stochastic simulation — Gillespie SSA and tau-leaping for reaction networks.

taxonomy

Taxonomy — microbial classification, morphology, metabolic types.