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Crate invariant_biosynthesis

Crate invariant_biosynthesis 

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Invariant โ€” biosynthesis domain crate.

Synthesis bundles, DNA/peptide/chemical/homology/molecule/protocol/stateful invariants, hazard screening, and the biosynthesis validator pipeline. Layered on top of invariant_core.

Modulesยง

attestation
Attested screening inputs and signed instrument telemetry.
audit
Append-only signed JSONL audit logger.
authority
PIC chain validation logic (chain.rs, operations.rs, crypto.rs).
bundle
Synthesis-bundle decoding + canonicalization helpers.
differential
Differential validation: dual-instance verdict comparison.
incident
Incident response automation (Section 10.6). Incident response automation (Section 10.6).
intent
Bio-specific intent templates (overrides the robotics templates in invariant_core::intent).
invariants
Biological + chemical safety invariants (D/P/C families).
keys
Key file management and abstract key storage. Key file management: load, save, validate, and decode Ed25519 key files.
models
Core data models for the biosynthesis firewall.
monitors
Runtime integrity monitors (Section 10.5). Runtime integrity monitors (Section 10.5).
profiles
Compile-time embedded library of bio profiles.
proof_package
Proof package generation (Section 20).
replication
Audit log replication and Merkle root witness (Section 10.4). Audit log replication and Merkle root witness (Section 10.4).
screening
Hazard-database screening interface.
threat
Runtime threat-scoring engine for biosynthesis.
util
Miscellaneous utilities (SHA-256, etc.).
validator
Validator pipeline: authority -> invariants -> signed verdict.
watchdog
Heartbeat monitor and safe-stop trigger.