Structs§
- Coverage
- IntSpan
IntSpan
handles of sets containing integer spans.- Named
Matrix - A named matrix for storing pairwise distances/scores with sequence names
- Range
- Scoring
Matrix
Functions§
- absolute_
path - basename
- build_
range_ of_ part - chrs_
in_ sets - cosine_
similarity - dot_
product - Computes the dot product of two vectors
a
andb
. - euclidean_
distance - Computes the Euclidean distance between two vectors
a
andb
. - extract_
rg - fields_
to_ ints - fill_
up_ m - fill_
up_ s - format_
number - get_
seq_ faidx - ints_
to_ idx - jaccard_
intersection - Computes the Jaccard intersection of two vectors
a
andb
. The Jaccard intersection is the sum of the minimum values of corresponding elements. - jaccard_
union - Computes the Jaccard union of two vectors
a
andb
. The Jaccard union is the sum of the maximum values of corresponding elements. - json2set
- json2set_
m - mean
- Computes the mean (average) of a vector
a
. - named_
field_ to_ idx - norm_l2
- Computes the L2 norm (Euclidean norm) of a vector
a
. - norm_
l2_ sq - Computes the squared L2 norm of a vector
a
. - pearson_
correlation - Computes the Pearson correlation coefficient between two vectors
a
andb
. - read_
first_ column - read_
json - read_
lines - read_
replaces - read_
sizes - reader
- set2json
- set2json_
m - sort_
links - sum
- Computes the sum of all elements in a vector
a
. - weighted_
jaccard_ similarity - write_
json - write_
lines - writer