Struct hpo::term::InformationContent

pub struct InformationContent { /* private fields */ }

The quality (in terms of specificity) of an HPO term

Information content describes how specific an HPO term is in relation to its associated genes or diseases

For more information, see Resnik P: Using information content to evaluate semantic similarity in a taxonomy. Proceedings of the 14th International Joint Conference on Artificial Intelligence: August 20-25. 1995, Morgan Kaufmann, San Francisco CA: Montreal, Canada

Implementations

impl InformationContent

pub fn gene(&self) -> f32

The Gene-specific information content

pub fn gene_mut(&mut self) -> &mut f32

A mutable reference to the Gene-specific information content

pub fn omim_disease(&self) -> f32

The OMIM-disease-specific information content

pub fn omim_disease_mut(&mut self) -> &mut f32

A mutable reference to the OMIM-disease-specific information content

pub fn get_kind(&self, kind: &InformationContentKind) -> f32

Returns the information content of the provided kind

pub fn set_gene(&mut self, total: usize, current: usize) -> HpoResult<()>

Calculates and caches the gene InformationContent

Errors

This method returns an error if there are more genes than u16::MAX because larger numbers can’t be safely converted to f32

pub fn set_omim_disease( &mut self, total: usize, current: usize ) -> HpoResult<()>

Calculates and caches the gene InformationContent

Errors

This method returns an error if there are more genes than u16::MAX because larger numbers can’t be safely converted to f32

Trait Implementations

impl Clone for InformationContent

fn clone(&self) -> InformationContent

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for InformationContent

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for InformationContent

fn default() -> InformationContent

Returns the “default value” for a type.