Struct hpo::similarity::defaults::Mutation

pub struct Mutation { /* private fields */ }

Similarity score based on the difference in associated genes or diseases

The Mutation algorithm calculates how many genes or diseases are associated to only one term and not the other. If two terms are linked to the same annotations, their similarity score will be 1. If both terms do not have any associated terms, they are considered completely different, i.e. have a similarity of 0.

Implementations

impl Mutation

pub fn new(kind: InformationContentKind) -> Self

Constructs a new struct to calculate the Mutation based similarity scores between two terms

Examples

use hpo::similarity::Mutation;
use hpo::term::InformationContentKind;

// use Omim-based InformationContent for similarity calculation
let jc = Mutation::new(InformationContentKind::Omim);

Trait Implementations

impl Debug for Mutation

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Similarity for Mutation

fn calculate(&self, a: &HpoTerm<'_>, b: &HpoTerm<'_>) -> f32

calculates the actual similarity between term a and term b