Struct hpo::similarity::defaults::Jc

pub struct Jc { /* private fields */ }

Similarity score from Jiang & Conrath

For a detailed description see Jiang J, Conrath D, Rocling X, (1997)

Note

This algorithm is an implementation as described in the paper cited above, with minor modifications. It is different from the JC implementation in the HPOSim R library. For a discussion on the correct implementation see this issue from pyhpo.

Note

The logic of the JC similarity was changed in version 0.8.3. Ensure you update to at least 0.8.3 before using it.

Implementations

impl Jc

pub fn new(kind: InformationContentKind) -> Self

Constructs a new struct to calculate the Jiang & Conrath based similarity scores between two terms

Examples

use hpo::similarity::Jc;
use hpo::term::InformationContentKind;

// use Omim-based InformationContent for similarity calculation
let jc = Jc::new(InformationContentKind::Omim);

Trait Implementations

impl Debug for Jc

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Similarity for Jc

fn calculate(&self, a: &HpoTerm<'_>, b: &HpoTerm<'_>) -> f32

calculates the actual similarity between term a and term b