holodeck_lib/output/mod.rs
1//! Output writers for simulated reads and ground truth files.
2//!
3//! Provides FASTQ output (always) and optional golden BAM output for
4//! benchmarking alignment pipelines. Supports single-threaded and
5//! multi-threaded BGZF compression via pooled-writer.
6
7/// Coverage-weighted per-CpG truth tally written as a MethylDackel-format
8/// bedGraph from simulated reads.
9pub mod cpg_truth;
10pub mod fastq;
11pub mod golden_bam;
12/// Closed-form per-CpG population-fraction bedGraph writer derived from a
13/// per-haplotype methylation bitmap; no simulated reads required.
14pub mod methylation_bedgraph;