Skip to main contentCrate holodeck_lib
Source - bed
- commands
- CLI subcommand implementations for the
holodeck binary. - error_model
- Sequencing error models for realistic quality score and error simulation.
- fasta
- fragment
- Fragment extraction and read base generation.
- haplotype
- meth
- Methylation bitmaps and chemistry-conversion logic.
- methylation_tags
- Per-base methylation calls and Bismark-style edit-distance summaries.
- output
- Output writers for simulated reads and ground truth files.
- ploidy
- read
- Simulated read pair generation.
- read_naming
- Read naming schemes for simulated reads.
- seed
- Deterministic seed computation for reproducible simulations.
- sequence_dict
- vcf
- VCF input/output for holodeck.
- version