List of all items
Structs
- data::cdot::json::Config
- data::cdot::json::Provider
- data::cdot::json::models::Container
- data::cdot::json::models::Exon
- data::cdot::json::models::Gene
- data::cdot::json::models::GenomeAlignment
- data::cdot::json::models::Transcript
- data::interface::GeneInfoRecord
- data::interface::TxExonsRecord
- data::interface::TxForRegionRecord
- data::interface::TxIdentityInfo
- data::interface::TxInfoRecord
- data::interface::TxMappingOptionsRecord
- data::interface::TxSimilarityRecord
- data::uta::Config
- data::uta::Provider
- data::uta_sr::Config
- data::uta_sr::Provider
- mapper::alignment::Config
- mapper::alignment::Mapper
- mapper::altseq::AltSeqBuilder
- mapper::altseq::AltSeqToHgvsp
- mapper::altseq::AltTranscriptData
- mapper::altseq::RefTranscriptData
- mapper::assembly::Config
- mapper::assembly::Mapper
- mapper::cigar::CigarElement
- mapper::cigar::CigarMapper
- mapper::cigar::CigarMapperResult
- mapper::cigar::CigarString
- mapper::variant::Config
- mapper::variant::Mapper
- normalizer::Config
- normalizer::Normalizer
- parser::Accession
- parser::CdsInterval
- parser::CdsLocEdit
- parser::CdsPos
- parser::GeneSymbol
- parser::GenomeInterval
- parser::GenomeLocEdit
- parser::MtInterval
- parser::MtLocEdit
- parser::NoRef
- parser::ProtInterval
- parser::ProtPos
- parser::RnaInterval
- parser::RnaLocEdit
- parser::RnaPos
- parser::TxInterval
- parser::TxLocEdit
- parser::TxPos
- validator::ExtrinsicValidator
- validator::FullValidator
- validator::IntrinsicValidator
- validator::NullValidator
Enums
- data::cdot::json::models::BioType
- data::cdot::json::models::Strand
- data::cdot::json::models::Tag
- data::error::Error
- mapper::Error
- mapper::assembly::InParAssume
- mapper::cigar::CigarOp
- normalizer::Direction
- normalizer::Error
- parser::CdsFrom
- parser::Error
- parser::HgvsVariant
- parser::Mu
- parser::NaEdit
- parser::ProtLocEdit
- parser::ProteinEdit
- parser::UncertainLengthChange
- sequences::Error
- sequences::TranslationTable
- validator::Error
- validator::ValidationLevel
Traits
Functions
- data::cdot::json::models::gap_to_cigar
- data::cdot::json::models::str_to_tag
- mapper::alignment::build_tx_cigar
- mapper::alignment::none_if_default
- mapper::altseq::ref_transcript_data_cached
- mapper::altseq::ref_transcript_data_cached_no_cache
- mapper::altseq::ref_transcript_data_cached_prime_cache
- mapper::cigar::parse::cigar_element
- mapper::cigar::parse::is_cigar_op_char
- mapper::cigar::parse_cigar_string
- sequences::aa1_to_aa3
- sequences::aa3_to_aa1
- sequences::aa_to_aa1
- sequences::aa_to_aa3
- sequences::normalize_sequence
- sequences::revcomp
- sequences::seq_md5
- sequences::translate_cds
- sequences::trim_common_prefixes
- sequences::trim_common_suffixes
Statics
- data::cdot::json::NCBI_ALN_METHOD
- data::cdot::json::REQUIRED_VERSION
- mapper::altseq::REF_TRANSCRIPT_DATA_CACHED