List of all items

Structs

• models::fragments::Fragment
• models::interval::Interval
• models::region::Region
• models::region_set::RegionSet
• models::region_set::RegionSetIterator
• models::region_set::SortedRegionSet
• models::region_set_list::RegionSetList
• models::region_set_list::RegionSetListIterator
• utils::FileInfo

Enums

• errors::RegionSetError
• models::coords::CoordinateMode
• utils::FileType

Traits

• models::region_set::IntervalSetOps

Functions

• models::region_set::sweep_intersect_chr
• models::region_set::sweep_setdiff_chr
• utils::chrom_karyotype_key
• utils::generate_id_to_region_map
• utils::generate_id_to_region_string_map
• utils::generate_ordering_map_for_universe_regions
• utils::generate_region_string_to_id_map
• utils::generate_region_to_id_map
• utils::get_chrom_sizes
• utils::get_dynamic_reader
• utils::get_dynamic_reader_w_stdin
• utils::get_file_info
• utils::parse_bedlike_file
• utils::read_bedset_file
• utils::remove_all_extensions

Constants

• consts::BAM_FILE_EXTENSION
• consts::BED_FILE_EXTENSION
• consts::CHR_COL_NAME
• consts::DELIMITER
• consts::END_COL_NAME
• consts::GTOK_EXT
• consts::GZ_FILE_EXTENSION
• consts::IGD_FILE_EXTENSION
• consts::START_COL_NAME