Crate grit_genomics 

GRIT: Genomic Range Interval Toolkit

This library provides efficient interval operations for genomic data analysis.

Features

• Parallel processing: Uses Rayon for multi-core parallelism
• Streaming I/O: Memory-efficient processing of large files
• Drop-in compatibility: Matches bedtools CLI arguments

Example

use grit_genomics::{bed, interval::Interval, commands::IntersectCommand};

// Read BED files
let a = bed::read_intervals("a.bed").unwrap();
let b = bed::read_intervals("b.bed").unwrap();

// Find intersections
let cmd = IntersectCommand::new();
let results = cmd.find_intersections_parallel(a, b);

Re-exports

pub use bed::read_intervals;

pub use bed::read_records;

pub use bed::BedReader;

pub use index::IntervalIndex;

pub use interval::BedRecord;

pub use interval::Interval;

pub use interval::Strand;

Modules

bed

Streaming BED file parser.

commands

Command implementations for bedtools-rs.

config

Global configuration for GRIT runtime behavior.

genome

Genome file parser for chromosome sizes.

index

Interval indexing for fast overlap queries.

interval

Core interval types for genomic region representation.

parallel

Parallel processing utilities using Rayon.

prelude

Prelude module for convenient imports.

streaming

Centralized streaming utilities for GRIT.

Constants

VERSION

Library version