Struct google_genomics1::ReferenceSet

pub struct ReferenceSet {
    pub description: Option<String>,
    pub source_uri: Option<String>,
    pub reference_ids: Option<Vec<String>>,
    pub assembly_id: Option<String>,
    pub source_accessions: Option<Vec<String>>,
    pub md5checksum: Option<String>,
    pub id: Option<String>,
    pub ncbi_taxon_id: Option<i32>,
}

A reference set is a set of references which typically comprise a reference assembly for a species, such as GRCh38 which is representative of the human genome. A reference set defines a common coordinate space for comparing reference-aligned experimental data. A reference set contains 1 or more references.

For more genomics resource definitions, see Fundamentals of Google Genomics

Activities

This type is used in activities, which are methods you may call on this type or where this type is involved in. The list links the activity name, along with information about where it is used (one of request and response).

• get referencesets (response)

Fields

description: Option<String>

Free text description of this reference set.

source_uri: Option<String>

The URI from which the references were obtained.

reference_ids: Option<Vec<String>>

The IDs of the reference objects that are part of this set. Reference.md5checksum must be unique within this set.

assembly_id: Option<String>

Public id of this reference set, such as GRCh37.

source_accessions: Option<Vec<String>>

All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example NC_000001.11.

md5checksum: Option<String>

Order-independent MD5 checksum which identifies this reference set. The checksum is computed by sorting all lower case hexidecimal string reference.md5checksum (for all reference in this set) in ascending lexicographic order, concatenating, and taking the MD5 of that value. The resulting value is represented in lower case hexadecimal format.

id: Option<String>

The server-generated reference set ID, unique across all reference sets.

ncbi_taxon_id: Option<i32>

ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human) indicating the species which this reference set is intended to model. Note that contained references may specify a different ncbiTaxonId, as assemblies may contain reference sequences which do not belong to the modeled species, for example EBV in a human reference genome.

Trait Implementations

impl Default for ReferenceSet

fn default() -> ReferenceSet

Returns the "default value" for a type.

impl Clone for ReferenceSet

fn clone(&self) -> ReferenceSet

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ReferenceSet

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl Resource for ReferenceSet

impl ResponseResult for ReferenceSet