Crate ggetrs_string

Source

Structs§

OutputArgs
StringFunctionalAnnotationArgs
Gets the functional annotation (Gene Ontology, UniProt Keywords, PFAM, INTERPRO and SMART domains) of your list of proteins.
StringFunctionalAnnotationArgsBuilder
Use builder syntax to set the inputs and finish with build().
StringFunctionalEnrichmentArgs
Performs the enrichment analysis of your set of proteins for the Gene Ontology, KEGG pathways, UniProt Keywords, PubMed publications, Pfam, InterPro and SMART domains.
StringFunctionalEnrichmentArgsBuilder
Use builder syntax to set the inputs and finish with build().
StringHomologyArgs
StringHomologyArgsBuilder
Use builder syntax to set the inputs and finish with build().
StringInteractionsArgs
Gets all the STRING interaction partners of your proteins
StringInteractionsArgsBuilder
Use builder syntax to set the inputs and finish with build().
StringMappingArgs
StringMappingArgsBuilder
Use builder syntax to set the inputs and finish with build().
StringNetworkArgs
Retrieves the network interactions for your input protein(s) in various text based formats
StringNetworkArgsBuilder
Use builder syntax to set the inputs and finish with build().
StringPpiEnrichmentArgs
Tests if your network has more interactions than expected
StringPpiEnrichmentArgsBuilder
Use builder syntax to set the inputs and finish with build().

Enums§

ModString
OutputFormat
StringNetworkType
WriteConfig

Functions§

launch_string_annotations
launch_string_enrichment
launch_string_homology
launch_string_interactions
launch_string_mapping
launch_string_network
launch_string_ppi_enrichment
match_output
Match the output to either a file or stdout
string_annotations
string_enrichment
string_homology
string_interactions
string_mapping
string_network
string_ppi_enrichment
write_dataframe