Struct gfautil::commands::gaf2paf::GAF2PAFArgs

pub struct GAF2PAFArgs { /* fields omitted */ }

Convert a file of GAF records into PAF records.

The provided GFA file should be the same as the one used to create the GAF.

Trait Implementations

impl Debug for GAF2PAFArgs

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl StructOpt for GAF2PAFArgs

fn clap<'a, 'b>() -> App<'a, 'b>

Returns the corresponding clap::App.

fn from_clap(matches: &ArgMatches<'_>) -> Self

Creates the struct from clap::ArgMatches. It cannot fail with a parameter generated by clap by construction.

pub fn from_args() -> Self

Gets the struct from the command line arguments. Print the error message and quit the program in case of failure.

pub fn from_iter<I>(iter: I) -> Self where
    I: IntoIterator,
    <I as IntoIterator>::Item: Into<OsString>,
    <I as IntoIterator>::Item: Clone, 

Gets the struct from any iterator such as a Vec of your making. Print the error message and quit the program in case of failure.

pub fn from_iter_safe<I>(iter: I) -> Result<Self, Error> where
    I: IntoIterator,
    <I as IntoIterator>::Item: Into<OsString>,
    <I as IntoIterator>::Item: Clone, 

Gets the struct from any iterator such as a Vec of your making.

impl StructOptInternal for GAF2PAFArgs

fn augment_clap<'a, 'b>(app: App<'a, 'b>) -> App<'a, 'b>

fn is_subcommand() -> bool

pub fn from_subcommand(
    _sub: (&'b str, Option<&'b ArgMatches<'a>>)
) -> Option<Self>