Structs§
- Containment
- GFA containment line
- Edges
- GFA edge line
- Fragment
- Gap
- Gfa
- A representation of a GFA file (v1 + v2)
- Group
- Ordered and unordered groups v2.0
- Haplotype
- PanSN-spec haplotype
- Header
- GFA header line This line begins with an ‘H’
- Jump
- Link
- GFA link line
- NCEdge
- Graph edges
- NCGfa
- The graph contains of nodes, path and edges. NCGfa = NumericCompactGfa This is a compact graph representation of the GFA file.
- NCNode
- Graph nodes:
- NCPath
- Path features:
- OptElem
- Optional fields for GFA 1
- Pansn
- PanSN-spec path data structure
- Path
- GFA path line:
- Sample
- Segment
- GFA segment line
- Walk
- Path features:
Traits§
Functions§
- create_
sort_ numeric - Create a numeric vector from a vector of strings
- vec_
check_ start - Check if the vector starts at 1
- vec_
is_ compact - Check if the vector is compact
- vec_
is_ digit - Does this vector contain only digits