Expand description
GeoPAGG: Geometric P-Value Aggregation for Gene Groups
This library implements the GeoPAGG algorithm, which is used for analyzing sgRNA differential abundance data by aggregating p-values and log fold changes across multiple sgRNAs targeting the same gene.
The main components of this library are:
GeoPAGG: The main algorithm implementationWeightConfig: Configuration for p-value weighting schemesTransformConfig: Configuration for p-value transformation methodsGeoPAGGResults: Structure to hold and display the results
Structs§
- GeoPAGG
- Implementation of the GeoPAGG (Geometric P-Value Aggregation for Gene Grouping) Algorithm
- GeoPAGG
Results
Enums§
- Error
- Transform
Config - Configurations for transforming p-values in the GeoPAGG algorithm
- Weight
Config - Configurations for weighting p-values in the GeoPAGG algorithm