Crate genome_graph

A crate to represent genome graphs.

Genome graphs are typically node- or edge-centric bigraphs that store genome strings on their nodes or edges respectively. This crate offers type aliases using the bigraph crate to easily define genome graphs, as well as methods for reading and writing them.

Currently, the format for input and output is the bcalm2 fasta format.

Re-exports

pub use bigraph;

pub use compact_genome;

Modules

error

Contains the error types used by this crate.

generic

A module providing types and functions for IO in a generic node-centric format.

io

Contains functions for reading and writing genome graphs.

types

Contains type aliases for genome graphs.