Enum gb_io::seq::Position

pub enum Position {
    Single(i64),
    Between(i64, i64),
    Span(Box<Position>, Box<Position>),
    Before(i64),
    After(i64),
    Complement(Box<Position>),
    Join(Vec<Position>),
    Order(Vec<Position>),
    Bond(Vec<Position>),
    OneOf(Vec<Position>),
    External(String, Option<Box<Position>>),
    Gap(Option<i64>),
}

Represents a Genbank "position", used to specify the location of features and in the CONTIG line. See http://www.insdc.org/files/feature_table.html for a detailed description of what they mean.

Note that positions specified here must always refer to a nucleotide within the sequence. Ranges are inclusive. To specify a range that wraps around, use join(x..last,1..y).

Variants

Single(i64)

Just a number

Between(i64, i64)

n^n+1

Span(Box<Position>, Box<Position>)

x..y

Before(i64)

<x

After(i64)

x

Complement(Box<Position>)Join(Vec<Position>)Order(Vec<Position>)Bond(Vec<Position>)OneOf(Vec<Position>)External(String, Option<Box<Position>>)Gap(Option<i64>)

Methods

impl Position

pub fn simple_span(first: i64, last: i64) -> Position

Convenience constructor for this commonly used variant

pub fn find_bounds(&self) -> Result<(i64, i64), PositionError>

Try to get the outermost bounds for a position. Returns the starting and finishing positions, as inclusive sequence coordinates.

pub fn truncate(&self, start: i64, end: i64) -> Option<Position>

Truncates this position, limiting it to the given bounds. Note: higher is exclusive. None is returned if no part of the position lies within the bounds.

pub fn to_gb_format(&self) -> String

Trait Implementations

impl PartialEq<Position> for Position

fn eq(&self, other: &Position) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Position) -> bool

This method tests for !=.

impl Clone for Position

fn clone(&self) -> Position

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Display for Position

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl Debug for Position

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.