List of all items
Structs
- cluster_argument_parsing::GalahClusterer
- cluster_argument_parsing::GalahClustererCommandDefinition
- cluster_argument_parsing::GalahOutput
- dashing::DashingPreclusterer
- fastani::FastaniClusterer
- finch::FinchPreclusterer
- genome_info_file::GenomeInfoGenomeQuality
- genome_stats::GenomeAssemblyStats
- skani::SkaniClusterer
- skani::SkaniPreclusterer
- sorted_pair_genome_distance_cache::SortedPairGenomeDistanceCache
Enums
Traits
Functions
- cluster_argument_parsing::add_cluster_subcommand
- cluster_argument_parsing::add_dereplication_clustering_parameters_to_section
- cluster_argument_parsing::add_dereplication_filtering_parameters_to_section
- cluster_argument_parsing::add_dereplication_output_parameters_to_section
- cluster_argument_parsing::cluster_full_help
- cluster_argument_parsing::filter_genomes_through_checkm
- cluster_argument_parsing::generate_galah_clusterer
- cluster_argument_parsing::parse_percentage
- cluster_argument_parsing::run_cluster_subcommand
- cluster_argument_parsing::setup_galah_outputs
- cluster_argument_parsing::write_galah_outputs
- cluster_validation::validate_clusters
- clusterer::cluster
- dashing::distances
- external_command_checker::check_for_dashing
- external_command_checker::check_for_dependencies
- external_command_checker::check_for_fastani
- fastani::calculate_fastani
- finch::distances
- genome_info_file::read_genome_info_file
- genome_stats::calculate_genome_stats
- skani::calculate_skani