Modules§
- cluster_
argument_ parsing - cluster_
validation - clusterer
- dashing
- external_
command_ checker - fastani
- finch
- genome_
info_ file - genome_
stats - skani
- sorted_
pair_ genome_ distance_ cache
Constants§
- AUTHOR
- CLUSTER_
METHODS - DEFAULT_
ALIGNED_ FRACTION - DEFAULT_
ANI - DEFAULT_
CLUSTER_ METHOD - DEFAULT_
FRAGMENT_ LENGTH - DEFAULT_
PRECLUSTER_ METHOD - DEFAULT_
PRETHRESHOLD_ ANI - DEFAULT_
QUALITY_ FORMULA - PRECLUSTER_
METHODS