Modules§
- analyse
- analyse_
argument_ parsing - barrnap
- checkm2
- cluster_
argument_ parsing - cluster_
validation - clusterer
- external_
command_ checker - fastani
- finch
- genome_
info_ file - genome_
stats - process
- process_
argument_ parsing - skani
- sorted_
pair_ genome_ distance_ cache - trnascan
Constants§
- AUTHOR
- CLUSTER_
METHODS - DEFAULT_
ALIGNED_ FRACTION - DEFAULT_
ANI - DEFAULT_
CLUSTER_ METHOD - DEFAULT_
FRAGMENT_ LENGTH - DEFAULT_
PRECLUSTER_ METHOD - DEFAULT_
PRETHRESHOLD_ ANI - DEFAULT_
QUALITY_ FORMULA - DEFAULT_
QUALITY_ METHOD - DEFAULT_
RRNA_ METHOD - DEFAULT_
TRNA_ METHOD - PRECLUSTER_
METHODS - QUALITY_
METHODS - RRNA_
METHODS - TRNA_
METHODS