Expand description
§fuzzyfold
The main entry point for the fuzzyfold nucleic acid folding package, with interfaces to multiple crates that are organized as a workspace. At this level, you can also find argument parsers for the binaries shipped with the fuzzyfold package.
This crate re-exports the main functionality from its submodules.
Modules§
- energy
- Exposing ff_energy as fuzzyfold::energy. Handling of nucleotide sequences, nearest neighbor loop decompositions and free energy evaluation models.
- energy_
parsers - Exposing the currently supported parameters of fuzzyfold’s energy models.
- input_
parsers - Various flavors of handling sequence/structure input.
- kinetics
- Exposing ff_kinetics as fuzzyfold::kinetics. The main stochastic simulation framework, introducing rate models, loop_structures, macrostates and time courses.
- kinetics_
parsers - Exposing the currently supported parameters of fuzzyfold’s rate models and simulation parameters.
- structure
- Exposing ff_structure as fuzzyfold::structure. A collection of practical data structures for RNA structure representations.