Crate fibertools_rs

Modules

cli

Command line interface for fibertools-rs.

extract

Structs

FiberOutFiles

Functions

get_closest_reference_positions

get_closest_reference_range

liftover_closest

liftover_exact

liftover positions using the cigar string

merge_two_lists

Merge two lists into a sorted list Normal sort is supposed to be very fast on two sorted lists https://doc.rust-lang.org/std/vec/struct.Vec.html#current-implementation-6

positions_on_complimented_sequence

get positions on the complimented sequence in the cigar record

search_sorted

search a sorted array for insertions positions of another sorted array returned index i satisfies left a[i-1] < v <= a[i] right a[i-1] <= v < a[i] https://numpy.org/doc/stable/reference/generated/numpy.searchsorted.html

writer

Write to stdout if - or the file specified by a path