Struct FragBuilder 

pub struct FragBuilder<'a> { /* private fields */ }

Builder for a single-end (fragment) read.

Implementations

impl<'a> FragBuilder<'a>

pub fn name(self, name: &str) -> FragBuilder<'a>

Sets the read name.

pub fn bases(self, bases: &str) -> FragBuilder<'a>

Sets the bases.

pub fn quals(self, quals: &[u8]) -> FragBuilder<'a>

Sets the quality scores.

pub fn contig(self, contig: usize) -> FragBuilder<'a>

Sets the reference sequence index.

pub fn start(self, start: usize) -> FragBuilder<'a>

Sets the alignment start (1-based). If not set, read is unmapped.

pub fn cigar(self, cigar: &str) -> FragBuilder<'a>

Sets the CIGAR string.

pub fn mapq(self, mapq: u8) -> FragBuilder<'a>

Sets the mapping quality.

pub fn strand(self, strand: Strand) -> FragBuilder<'a>

Sets the strand.

pub fn unmapped(self) -> FragBuilder<'a>

Marks the read as unmapped.

pub fn attr<V>(self, tag: &str, value: V) -> FragBuilder<'a>

where V: Into<Value>,

Adds a tag to the read.

pub fn build(self) -> RecordBuf

Builds the record, adds to parent, and returns a clone of the record.

Panics

Panics if the alignment start position is invalid.