Crate fgumi_metrics 

Structured metric types and TSV writer for fgumi operations.

This crate provides:

• Metric and ProcessingMetrics traits for extensible metric types
• Metric structs for consensus, grouping, correction, and duplex operations
• rejection module for rejection reason tracking
• writer module for TSV file output

Re-exports

pub use clip::ClipCounts;

pub use clip::ClippingMetrics;

pub use clip::ClippingMetricsCollection;

pub use clip::ReadType;

pub use consensus::ConsensusKvMetric;

pub use consensus::ConsensusMetrics;

pub use correct::UmiCorrectionMetrics;

pub use duplex::DuplexFamilySizeMetric;

pub use duplex::DuplexMetricsCollector;

pub use duplex::DuplexUmiMetric;

pub use duplex::DuplexYieldMetric;

pub use duplex::FamilySizeMetric;

pub use group::FamilySizeMetrics;

pub use group::PositionGroupSizeMetrics;

pub use group::UmiGroupingMetrics;

pub use rejection::RejectionReason;

pub use rejection::format_count;

pub use shared::UmiMetric;

pub use simplex::SimplexFamilySizeMetric;

pub use simplex::SimplexMetricsCollector;

pub use simplex::SimplexYieldMetric;

pub use writer::read_metrics;

pub use writer::read_metrics_auto;

pub use writer::write_metrics;

Modules

clip

Clipping metrics for the clip command.

consensus

Metrics for consensus calling commands.

correct

Metrics for the correct command.

duplex

Metrics for the duplex_metrics command.

group

Metrics for the group command.

rejection

Rejection reason tracking for reads and templates.

shared

Shared UMI tracking types used across simplex and duplex metrics.

simplex

Metrics for the simplex-metrics command.

writer

Utilities for writing metrics files.

Constants

FLOAT_PRECISION

Number of decimal places used for float metrics (matches fgbio).

Traits

Metric

A metric type that can be serialized to TSV files.

ProcessingMetrics

Common interface for metrics that track processing pipeline counts.

Functions

format_float

Formats a float value with the standard precision for metrics.

frac

Computes numerator / denominator, returning 0.0 if the denominator is zero.

frac_u64

Computes numerator / denominator for u64 values, returning 0.0 if denominator is zero.