Crate fgumi_dna 

DNA sequence utilities and constants.

This crate provides fundamental DNA operations:

• Complement and reverse-complement of DNA sequences
• 2-bit encoding for efficient UMI comparison (Hamming distance)
• Common constants for base quality and no-call handling

Re-exports

pub use bitenc::BitEnc;

pub use dna::complement_base;

pub use dna::complement_base_preserve_case;

pub use dna::reverse_complement;

pub use dna::reverse_complement_str;

Modules

bitenc

A 2-bit DNA encoding for fast UMI comparison.

dna

DNA sequence utilities.

Constants

MIN_PHRED

Minimum Phred score (Q2, matching fgbio’s PhredScore.MinValue).

NO_CALL_BASE

No-call base character (matches fgbio’s NoCallBase).

NO_CALL_BASE_LOWER

Lowercase no-call base character.