Expand description
Transcript and exon models
§Coordinate System
All coordinates in this module are 1-based inclusive:
| Field | Basis | Notes |
|---|---|---|
Exon.start, Exon.end | 1-based | Transcript coordinates (inclusive) |
Exon.genomic_start, Exon.genomic_end | 1-based | Genomic coordinates (inclusive) |
Intron.genomic_start, Intron.genomic_end | 1-based | First/last intronic base |
Transcript.cds_start, Transcript.cds_end | 1-based | CDS boundaries in transcript space |
For type-safe coordinate handling, see crate::coords.
Structs§
- Exon
- An exon in a transcript
- Intron
- An intron between two exons
- Intron
Position - Position within an intron
- Transcript
- A transcript with its exon structure and sequence
Enums§
- Genome
Build - Genome build/assembly version
- Intron
Boundary - Which boundary of an intron a position is relative to
- Mane
Status - MANE (Matched Annotation from NCBI and EBI) transcript status
- Splice
Site Type - Type of splice site position
- Strand
- Strand orientation